Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 RBM17P1-201ENST00000453646 1190 ntBASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PCDHB3Q9Y5E6 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.63■□□□□ 0.57
PCDHB3Q9Y5E6 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
PCDHB3Q9Y5E6 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHB3Q9Y5E6 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHB3Q9Y5E6 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.63■□□□□ 0.57
PCDHB3Q9Y5E6 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHB3Q9Y5E6 AC145285.6-201ENST00000604632 637 ntBASIC18.63■□□□□ 0.57
PCDHB3Q9Y5E6 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHB3Q9Y5E6 AL031985.4-201ENST00000642138 673 ntBASIC18.63■□□□□ 0.57
PCDHB3Q9Y5E6 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHB3Q9Y5E6 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHB3Q9Y5E6 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHB3Q9Y5E6 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHB3Q9Y5E6 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHB3Q9Y5E6 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 AC026271.3-201ENST00000571884 352 ntBASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 RN7SL850P-201ENST00000579959 291 ntBASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 MIR6786-201ENST00000616843 113 ntBASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 AC026471.1-201ENST00000564629 3026 ntBASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
PCDHB3Q9Y5E6 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 AL049597.2-201ENST00000565575 961 ntBASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 AL590326.2-201ENST00000625139 305 ntBASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 AC092865.7-201ENST00000641832 219 ntBASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 NEFHP1-201ENST00000412845 2629 ntBASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.61■□□□□ 0.57
PCDHB3Q9Y5E6 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms