Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC36.16■■■■□ 3.38
SHROOM4Q9ULL8 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC36.16■■■■□ 3.38
SHROOM4Q9ULL8 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC36.16■■■■□ 3.38
SHROOM4Q9ULL8 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC36.16■■■■□ 3.38
SHROOM4Q9ULL8 AP002469.2-201ENST00000531724 424 ntBASIC36.16■■■■□ 3.38
SHROOM4Q9ULL8 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC36.16■■■■□ 3.38
SHROOM4Q9ULL8 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC36.16■■■■□ 3.38
SHROOM4Q9ULL8 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC36.16■■■■□ 3.38
SHROOM4Q9ULL8 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC36.16■■■■□ 3.38
SHROOM4Q9ULL8 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC36.16■■■■□ 3.38
SHROOM4Q9ULL8 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC36.16■■■■□ 3.38
SHROOM4Q9ULL8 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC36.15■■■■□ 3.38
SHROOM4Q9ULL8 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC36.15■■■■□ 3.38
SHROOM4Q9ULL8 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC36.15■■■■□ 3.38
SHROOM4Q9ULL8 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC36.15■■■■□ 3.38
SHROOM4Q9ULL8 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC36.15■■■■□ 3.38
SHROOM4Q9ULL8 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC36.15■■■■□ 3.38
SHROOM4Q9ULL8 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC36.15■■■■□ 3.38
SHROOM4Q9ULL8 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC36.15■■■■□ 3.38
SHROOM4Q9ULL8 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC36.15■■■■□ 3.38
SHROOM4Q9ULL8 EMBP1-201ENST00000458200 901 ntBASIC36.15■■■■□ 3.38
SHROOM4Q9ULL8 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC36.15■■■■□ 3.38
SHROOM4Q9ULL8 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC36.15■■■■□ 3.38
SHROOM4Q9ULL8 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC36.15■■■■□ 3.38
SHROOM4Q9ULL8 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC36.14■■■■□ 3.38
SHROOM4Q9ULL8 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC36.14■■■■□ 3.38
SHROOM4Q9ULL8 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC36.14■■■■□ 3.38
SHROOM4Q9ULL8 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC36.14■■■■□ 3.38
SHROOM4Q9ULL8 MIR4674-201ENST00000582457 87 ntBASIC36.14■■■■□ 3.38
SHROOM4Q9ULL8 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC36.14■■■■□ 3.38
SHROOM4Q9ULL8 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC36.14■■■■□ 3.38
SHROOM4Q9ULL8 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC36.14■■■■□ 3.38
SHROOM4Q9ULL8 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC36.13■■■■□ 3.37
SHROOM4Q9ULL8 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC36.13■■■■□ 3.37
SHROOM4Q9ULL8 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC36.13■■■■□ 3.37
SHROOM4Q9ULL8 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC36.13■■■■□ 3.37
SHROOM4Q9ULL8 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC36.13■■■■□ 3.37
SHROOM4Q9ULL8 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC36.13■■■■□ 3.37
SHROOM4Q9ULL8 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC36.13■■■■□ 3.37
SHROOM4Q9ULL8 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC36.13■■■■□ 3.37
SHROOM4Q9ULL8 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC36.13■■■■□ 3.37
SHROOM4Q9ULL8 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC36.13■■■■□ 3.37
SHROOM4Q9ULL8 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC36.13■■■■□ 3.37
SHROOM4Q9ULL8 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC36.13■■■■□ 3.37
SHROOM4Q9ULL8 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC36.13■■■■□ 3.37
SHROOM4Q9ULL8 TBC1D3P2-202ENST00000577902 1649 ntBASIC36.13■■■■□ 3.37
SHROOM4Q9ULL8 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC36.13■■■■□ 3.37
SHROOM4Q9ULL8 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC36.13■■■■□ 3.37
SHROOM4Q9ULL8 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC36.13■■■■□ 3.37
SHROOM4Q9ULL8 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC36.13■■■■□ 3.37
SHROOM4Q9ULL8 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC36.12■■■■□ 3.37
SHROOM4Q9ULL8 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC36.12■■■■□ 3.37
SHROOM4Q9ULL8 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC36.12■■■■□ 3.37
SHROOM4Q9ULL8 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC36.12■■■■□ 3.37
SHROOM4Q9ULL8 AC139530.3-201ENST00000620344 690 ntBASIC36.12■■■■□ 3.37
SHROOM4Q9ULL8 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC36.12■■■■□ 3.37
SHROOM4Q9ULL8 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC36.12■■■■□ 3.37
SHROOM4Q9ULL8 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC36.12■■■■□ 3.37
SHROOM4Q9ULL8 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC36.12■■■■□ 3.37
SHROOM4Q9ULL8 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC36.12■■■■□ 3.37
SHROOM4Q9ULL8 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC36.12■■■■□ 3.37
SHROOM4Q9ULL8 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC36.12■■■■□ 3.37
SHROOM4Q9ULL8 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC36.12■■■■□ 3.37
SHROOM4Q9ULL8 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC36.12■■■■□ 3.37
SHROOM4Q9ULL8 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC36.12■■■■□ 3.37
SHROOM4Q9ULL8 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC36.12■■■■□ 3.37
SHROOM4Q9ULL8 AL662844.1-201ENST00000546340 181 ntBASIC36.11■■■■□ 3.37
SHROOM4Q9ULL8 GXYLT1P4-201ENST00000613576 1192 ntBASIC36.11■■■■□ 3.37
SHROOM4Q9ULL8 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC36.11■■■■□ 3.37
SHROOM4Q9ULL8 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC36.11■■■■□ 3.37
SHROOM4Q9ULL8 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC36.11■■■■□ 3.37
SHROOM4Q9ULL8 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC36.11■■■■□ 3.37
SHROOM4Q9ULL8 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC36.11■■■■□ 3.37
SHROOM4Q9ULL8 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC36.11■■■■□ 3.37
SHROOM4Q9ULL8 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC36.11■■■■□ 3.37
SHROOM4Q9ULL8 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC36.11■■■■□ 3.37
SHROOM4Q9ULL8 TSPY12P-201ENST00000421279 868 ntBASIC36.11■■■■□ 3.37
SHROOM4Q9ULL8 BX276092.5-203ENST00000456199 560 ntBASIC36.11■■■■□ 3.37
SHROOM4Q9ULL8 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC36.11■■■■□ 3.37
SHROOM4Q9ULL8 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC36.11■■■■□ 3.37
SHROOM4Q9ULL8 AL732292.2-201ENST00000609649 430 ntBASIC36.11■■■■□ 3.37
SHROOM4Q9ULL8 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC36.1■■■■□ 3.37
SHROOM4Q9ULL8 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC36.1■■■■□ 3.37
SHROOM4Q9ULL8 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC36.1■■■■□ 3.37
SHROOM4Q9ULL8 PWWP2AP1-201ENST00000429776 2273 ntBASIC36.1■■■■□ 3.37
SHROOM4Q9ULL8 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC36.1■■■■□ 3.37
SHROOM4Q9ULL8 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC36.1■■■■□ 3.37
SHROOM4Q9ULL8 ZNF815P-204ENST00000434898 1737 ntBASIC36.1■■■■□ 3.37
SHROOM4Q9ULL8 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC36.1■■■■□ 3.37
SHROOM4Q9ULL8 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC36.1■■■■□ 3.37
SHROOM4Q9ULL8 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC36.1■■■■□ 3.37
SHROOM4Q9ULL8 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC36.1■■■■□ 3.37
SHROOM4Q9ULL8 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC36.1■■■■□ 3.37
SHROOM4Q9ULL8 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC36.1■■■■□ 3.37
SHROOM4Q9ULL8 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC36.09■■■■□ 3.37
SHROOM4Q9ULL8 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC36.09■■■■□ 3.37
SHROOM4Q9ULL8 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC36.09■■■■□ 3.37
SHROOM4Q9ULL8 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC36.09■■■■□ 3.37
SHROOM4Q9ULL8 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC36.09■■■■□ 3.37
SHROOM4Q9ULL8 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC36.09■■■■□ 3.37
Retrieved 100 of 98,524 protein–RNA pairs in 325.2 ms