Protein–RNA interactions for Protein: Q9BZS1

FOXP3, Forkhead box protein P3, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXP3Q9BZS1 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
FOXP3Q9BZS1 SNORA78-201ENST00000459373 127 ntBASIC19.64■□□□□ 0.73
FOXP3Q9BZS1 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
FOXP3Q9BZS1 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
FOXP3Q9BZS1 MIR4497-201ENST00000583208 89 ntBASIC19.64■□□□□ 0.73
FOXP3Q9BZS1 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
FOXP3Q9BZS1 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.64■□□□□ 0.73
FOXP3Q9BZS1 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.64■□□□□ 0.73
FOXP3Q9BZS1 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXP3Q9BZS1 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXP3Q9BZS1 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
FOXP3Q9BZS1 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
FOXP3Q9BZS1 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.64■□□□□ 0.73
FOXP3Q9BZS1 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
FOXP3Q9BZS1 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXP3Q9BZS1 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXP3Q9BZS1 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXP3Q9BZS1 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXP3Q9BZS1 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 AC104581.1-202ENST00000635932 2618 ntBASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 BICD1-207ENST00000551848 1962 ntBASIC19.63■□□□□ 0.73
FOXP3Q9BZS1 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
FOXP3Q9BZS1 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 AC006557.6-201ENST00000623071 864 ntBASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
FOXP3Q9BZS1 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms