Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 TSPY5P-201ENST00000426936 936 ntBASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.84■□□□□ 0.93
TRAIPQ9BWF2 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRAIPQ9BWF2 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.83■□□□□ 0.93
TRAIPQ9BWF2 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRAIPQ9BWF2 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRAIPQ9BWF2 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRAIPQ9BWF2 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRAIPQ9BWF2 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRAIPQ9BWF2 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20.83■□□□□ 0.93
TRAIPQ9BWF2 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
TRAIPQ9BWF2 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRAIPQ9BWF2 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRAIPQ9BWF2 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TRAIPQ9BWF2 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.83■□□□□ 0.92
TRAIPQ9BWF2 ZNF815P-204ENST00000434898 1737 ntBASIC20.83■□□□□ 0.92
TRAIPQ9BWF2 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
TRAIPQ9BWF2 AC125437.2-201ENST00000625180 2167 ntBASIC20.83■□□□□ 0.92
TRAIPQ9BWF2 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.83■□□□□ 0.92
TRAIPQ9BWF2 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
TRAIPQ9BWF2 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.83■□□□□ 0.92
TRAIPQ9BWF2 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRAIPQ9BWF2 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRAIPQ9BWF2 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.82■□□□□ 0.92
TRAIPQ9BWF2 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
TRAIPQ9BWF2 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRAIPQ9BWF2 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
TRAIPQ9BWF2 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.82■□□□□ 0.92
TRAIPQ9BWF2 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRAIPQ9BWF2 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRAIPQ9BWF2 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.82■□□□□ 0.92
TRAIPQ9BWF2 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRAIPQ9BWF2 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRAIPQ9BWF2 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC20.82■□□□□ 0.92
TRAIPQ9BWF2 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.82■□□□□ 0.92
TRAIPQ9BWF2 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRAIPQ9BWF2 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRAIPQ9BWF2 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 AC087388.1-201ENST00000571370 1112 ntBASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRAIPQ9BWF2 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms