Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKP4Q99569 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PKP4Q99569 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKP4Q99569 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKP4Q99569 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
PKP4Q99569 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKP4Q99569 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKP4Q99569 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKP4Q99569 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.54■□□□□ 0.56
PKP4Q99569 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
PKP4Q99569 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.54■□□□□ 0.56
PKP4Q99569 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKP4Q99569 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
PKP4Q99569 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PKP4Q99569 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PKP4Q99569 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PKP4Q99569 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.54■□□□□ 0.56
PKP4Q99569 AC093827.2-201ENST00000512654 315 ntBASIC18.54■□□□□ 0.56
PKP4Q99569 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.54■□□□□ 0.56
PKP4Q99569 AP003071.4-201ENST00000562276 1284 ntBASIC18.54■□□□□ 0.56
PKP4Q99569 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.54■□□□□ 0.56
PKP4Q99569 AP000692.2-201ENST00000608391 879 ntBASIC18.54■□□□□ 0.56
PKP4Q99569 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.54■□□□□ 0.56
PKP4Q99569 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKP4Q99569 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKP4Q99569 AC018445.3-201ENST00000624177 1945 ntBASIC18.54■□□□□ 0.56
PKP4Q99569 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKP4Q99569 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKP4Q99569 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKP4Q99569 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKP4Q99569 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.53■□□□□ 0.56
PKP4Q99569 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PKP4Q99569 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PKP4Q99569 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
PKP4Q99569 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PKP4Q99569 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PKP4Q99569 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PKP4Q99569 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.53■□□□□ 0.56
PKP4Q99569 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.53■□□□□ 0.56
PKP4Q99569 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.53■□□□□ 0.56
PKP4Q99569 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
PKP4Q99569 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.53■□□□□ 0.56
PKP4Q99569 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
PKP4Q99569 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.53■□□□□ 0.56
PKP4Q99569 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
PKP4Q99569 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.53■□□□□ 0.56
PKP4Q99569 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.53■□□□□ 0.56
PKP4Q99569 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.53■□□□□ 0.56
PKP4Q99569 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PKP4Q99569 BX323043.1-201ENST00000641006 1765 ntBASIC18.53■□□□□ 0.56
PKP4Q99569 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PKP4Q99569 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.52■□□□□ 0.56
PKP4Q99569 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PKP4Q99569 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.52■□□□□ 0.56
PKP4Q99569 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
PKP4Q99569 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
PKP4Q99569 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PKP4Q99569 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PKP4Q99569 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.56
PKP4Q99569 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
PKP4Q99569 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.52■□□□□ 0.56
PKP4Q99569 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.52■□□□□ 0.56
PKP4Q99569 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
PKP4Q99569 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.52■□□□□ 0.56
PKP4Q99569 PRSS44-201ENST00000515154 1146 ntBASIC18.52■□□□□ 0.56
PKP4Q99569 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
PKP4Q99569 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.52■□□□□ 0.56
PKP4Q99569 MIR4785-201ENST00000585005 73 ntBASIC18.52■□□□□ 0.56
PKP4Q99569 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
PKP4Q99569 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PKP4Q99569 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.52■□□□□ 0.56
PKP4Q99569 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PKP4Q99569 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PKP4Q99569 AC098818.2-201ENST00000564925 2320 ntBASIC18.52■□□□□ 0.56
PKP4Q99569 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PKP4Q99569 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
PKP4Q99569 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.52■□□□□ 0.55
PKP4Q99569 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
PKP4Q99569 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PKP4Q99569 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PKP4Q99569 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
PKP4Q99569 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
PKP4Q99569 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PKP4Q99569 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PKP4Q99569 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.51■□□□□ 0.55
PKP4Q99569 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.51■□□□□ 0.55
PKP4Q99569 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.51■□□□□ 0.55
PKP4Q99569 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.51■□□□□ 0.55
PKP4Q99569 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PKP4Q99569 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PKP4Q99569 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PKP4Q99569 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PKP4Q99569 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PKP4Q99569 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.51■□□□□ 0.55
PKP4Q99569 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.51■□□□□ 0.55
PKP4Q99569 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.51■□□□□ 0.55
PKP4Q99569 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.51■□□□□ 0.55
PKP4Q99569 MIR4497-201ENST00000583208 89 ntBASIC18.51■□□□□ 0.55
PKP4Q99569 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.51■□□□□ 0.55
PKP4Q99569 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms