Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 LIN28AP1-201ENST00000429574 405 ntBASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 MFAP1P1-201ENST00000442257 1255 ntBASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 SLC25A3P1-201ENST00000443844 931 ntBASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 AC008040.2-201ENST00000461049 708 ntBASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 AC091390.4-202ENST00000476426 537 ntBASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 Z85996.1-201ENST00000494644 937 ntBASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 EGLN1P1-201ENST00000531623 762 ntBASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLIP3Q96DZ5 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
CLIP3Q96DZ5 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLIP3Q96DZ5 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLIP3Q96DZ5 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
CLIP3Q96DZ5 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLIP3Q96DZ5 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.33■□□□□ 0.53
CLIP3Q96DZ5 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CLIP3Q96DZ5 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 KRT18P57-201ENST00000443599 1254 ntBASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
CLIP3Q96DZ5 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 ATP5G1P1-201ENST00000448724 379 ntBASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 ECEL1P2-202ENST00000465689 757 ntBASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLIP3Q96DZ5 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 AC120498.9-201ENST00000339021 3867 ntBASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 TSPY14P-201ENST00000303979 915 ntBASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 TERF1P1-201ENST00000311003 1181 ntBASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLIP3Q96DZ5 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms