Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.62■□□□□ 0.89
VPS52Q8N1B4 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
VPS52Q8N1B4 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.62■□□□□ 0.89
VPS52Q8N1B4 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
VPS52Q8N1B4 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS52Q8N1B4 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 CA15P1-201ENST00000481698 905 ntBASIC20.61■□□□□ 0.89
VPS52Q8N1B4 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 AL512604.3-201ENST00000569583 964 ntBASIC20.61■□□□□ 0.89
VPS52Q8N1B4 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS52Q8N1B4 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.6■□□□□ 0.89
VPS52Q8N1B4 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
VPS52Q8N1B4 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VPS52Q8N1B4 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
VPS52Q8N1B4 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
VPS52Q8N1B4 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VPS52Q8N1B4 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS52Q8N1B4 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.59■□□□□ 0.89
VPS52Q8N1B4 CKBP1-201ENST00000565489 1086 ntBASIC20.59■□□□□ 0.89
VPS52Q8N1B4 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.59■□□□□ 0.89
VPS52Q8N1B4 AL031432.5-201ENST00000641059 760 ntBASIC20.59■□□□□ 0.89
VPS52Q8N1B4 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.59■□□□□ 0.89
VPS52Q8N1B4 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS52Q8N1B4 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VPS52Q8N1B4 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS52Q8N1B4 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS52Q8N1B4 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VPS52Q8N1B4 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS52Q8N1B4 KRT8P41-201ENST00000533985 1514 ntBASIC20.58■□□□□ 0.89
VPS52Q8N1B4 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS52Q8N1B4 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS52Q8N1B4 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS52Q8N1B4 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS52Q8N1B4 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS52Q8N1B4 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS52Q8N1B4 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS52Q8N1B4 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.58■□□□□ 0.89
VPS52Q8N1B4 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.58■□□□□ 0.89
VPS52Q8N1B4 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.58■□□□□ 0.89
VPS52Q8N1B4 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS52Q8N1B4 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
VPS52Q8N1B4 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.58■□□□□ 0.89
VPS52Q8N1B4 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.58■□□□□ 0.89
VPS52Q8N1B4 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS52Q8N1B4 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
VPS52Q8N1B4 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.58■□□□□ 0.88
VPS52Q8N1B4 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS52Q8N1B4 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS52Q8N1B4 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS52Q8N1B4 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.58■□□□□ 0.88
VPS52Q8N1B4 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.58■□□□□ 0.88
VPS52Q8N1B4 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS52Q8N1B4 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS52Q8N1B4 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.57■□□□□ 0.88
VPS52Q8N1B4 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS52Q8N1B4 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.57■□□□□ 0.88
VPS52Q8N1B4 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS52Q8N1B4 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS52Q8N1B4 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS52Q8N1B4 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS52Q8N1B4 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms