Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
NPHP3Q7Z494 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC25.85■■□□□ 1.73
NPHP3Q7Z494 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC25.85■■□□□ 1.73
NPHP3Q7Z494 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC25.85■■□□□ 1.73
NPHP3Q7Z494 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
NPHP3Q7Z494 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC25.85■■□□□ 1.73
NPHP3Q7Z494 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
NPHP3Q7Z494 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
NPHP3Q7Z494 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
NPHP3Q7Z494 PPIE-208ENST00000470213 927 ntTSL 3 BASIC25.85■■□□□ 1.73
NPHP3Q7Z494 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
NPHP3Q7Z494 ABR-204ENST00000543210 1049 ntTSL 2 BASIC25.85■■□□□ 1.73
NPHP3Q7Z494 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC25.85■■□□□ 1.73
NPHP3Q7Z494 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC25.85■■□□□ 1.73
NPHP3Q7Z494 AC099336.1-202ENST00000602961 463 ntBASIC25.85■■□□□ 1.73
NPHP3Q7Z494 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC25.85■■□□□ 1.73
NPHP3Q7Z494 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
NPHP3Q7Z494 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
NPHP3Q7Z494 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC25.84■■□□□ 1.73
NPHP3Q7Z494 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC25.84■■□□□ 1.73
NPHP3Q7Z494 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC25.84■■□□□ 1.73
NPHP3Q7Z494 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
NPHP3Q7Z494 ME2-216ENST00000639850 2331 ntTSL 5 BASIC25.84■■□□□ 1.73
NPHP3Q7Z494 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
NPHP3Q7Z494 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC25.84■■□□□ 1.73
NPHP3Q7Z494 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC25.84■■□□□ 1.73
NPHP3Q7Z494 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC25.84■■□□□ 1.73
NPHP3Q7Z494 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
NPHP3Q7Z494 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
NPHP3Q7Z494 AL390719.2-201ENST00000606993 987 ntBASIC25.84■■□□□ 1.73
NPHP3Q7Z494 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC25.84■■□□□ 1.73
NPHP3Q7Z494 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
NPHP3Q7Z494 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC25.84■■□□□ 1.73
NPHP3Q7Z494 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC25.83■■□□□ 1.73
NPHP3Q7Z494 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.73
NPHP3Q7Z494 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC25.83■■□□□ 1.73
NPHP3Q7Z494 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
NPHP3Q7Z494 MIR574-201ENST00000385209 96 ntBASIC25.83■■□□□ 1.73
NPHP3Q7Z494 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC25.83■■□□□ 1.73
NPHP3Q7Z494 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC25.83■■□□□ 1.73
NPHP3Q7Z494 SAPCD2P3-201ENST00000455031 850 ntBASIC25.83■■□□□ 1.73
NPHP3Q7Z494 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC25.83■■□□□ 1.73
NPHP3Q7Z494 Z69720.1-201ENST00000601483 472 ntBASIC25.83■■□□□ 1.73
NPHP3Q7Z494 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.73
NPHP3Q7Z494 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC25.83■■□□□ 1.73
NPHP3Q7Z494 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
NPHP3Q7Z494 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.72
NPHP3Q7Z494 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.72
NPHP3Q7Z494 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC25.83■■□□□ 1.72
NPHP3Q7Z494 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
NPHP3Q7Z494 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC25.82■■□□□ 1.72
NPHP3Q7Z494 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
NPHP3Q7Z494 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC25.82■■□□□ 1.72
NPHP3Q7Z494 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
NPHP3Q7Z494 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC25.82■■□□□ 1.72
NPHP3Q7Z494 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC25.82■■□□□ 1.72
NPHP3Q7Z494 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
NPHP3Q7Z494 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC25.82■■□□□ 1.72
NPHP3Q7Z494 AC005332.3-201ENST00000589904 676 ntBASIC25.82■■□□□ 1.72
NPHP3Q7Z494 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC25.82■■□□□ 1.72
NPHP3Q7Z494 AF228730.7-201ENST00000641842 219 ntBASIC25.82■■□□□ 1.72
NPHP3Q7Z494 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
NPHP3Q7Z494 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
NPHP3Q7Z494 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC25.82■■□□□ 1.72
NPHP3Q7Z494 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP3Q7Z494 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP3Q7Z494 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC25.81■■□□□ 1.72
NPHP3Q7Z494 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP3Q7Z494 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP3Q7Z494 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP3Q7Z494 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP3Q7Z494 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP3Q7Z494 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP3Q7Z494 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP3Q7Z494 ZNF815P-204ENST00000434898 1737 ntBASIC25.81■■□□□ 1.72
NPHP3Q7Z494 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP3Q7Z494 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC25.81■■□□□ 1.72
NPHP3Q7Z494 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP3Q7Z494 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP3Q7Z494 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
NPHP3Q7Z494 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC25.81■■□□□ 1.72
NPHP3Q7Z494 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP3Q7Z494 RNA5SP419-201ENST00000515908 135 ntBASIC25.81■■□□□ 1.72
NPHP3Q7Z494 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC25.81■■□□□ 1.72
NPHP3Q7Z494 REXO1L6P-202ENST00000619970 1078 ntBASIC25.81■■□□□ 1.72
NPHP3Q7Z494 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC25.81■■□□□ 1.72
NPHP3Q7Z494 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
NPHP3Q7Z494 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
NPHP3Q7Z494 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC25.8■■□□□ 1.72
NPHP3Q7Z494 LINC00565-201ENST00000562710 2331 ntBASIC25.8■■□□□ 1.72
NPHP3Q7Z494 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC25.8■■□□□ 1.72
NPHP3Q7Z494 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
NPHP3Q7Z494 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
NPHP3Q7Z494 IGHV3-47-201ENST00000425060 335 ntBASIC25.8■■□□□ 1.72
NPHP3Q7Z494 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
NPHP3Q7Z494 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
NPHP3Q7Z494 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC25.8■■□□□ 1.72
NPHP3Q7Z494 FICD-205ENST00000552758 603 ntTSL 2 BASIC25.8■■□□□ 1.72
NPHP3Q7Z494 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC25.8■■□□□ 1.72
NPHP3Q7Z494 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms