Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 IGHV3-47-201ENST00000425060 335 ntBASIC20.19■□□□□ 0.82
CHD9Q3L8U1 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 RPL18-209ENST00000550645 463 ntTSL 5 BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 RPL18-214ENST00000552588 559 ntTSL 3 BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 FICD-205ENST00000552758 603 ntTSL 2 BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 AP005212.1-201ENST00000581547 1997 ntBASIC20.18■□□□□ 0.82
CHD9Q3L8U1 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 BX842568.4-201ENST00000421222 227 ntBASIC20.18■□□□□ 0.82
CHD9Q3L8U1 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 AC104819.1-201ENST00000504587 486 ntBASIC20.18■□□□□ 0.82
CHD9Q3L8U1 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHD9Q3L8U1 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHD9Q3L8U1 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHD9Q3L8U1 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CHD9Q3L8U1 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
CHD9Q3L8U1 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHD9Q3L8U1 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.17■□□□□ 0.82
CHD9Q3L8U1 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHD9Q3L8U1 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHD9Q3L8U1 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CHD9Q3L8U1 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC20.17■□□□□ 0.82
CHD9Q3L8U1 RNPS1P1-201ENST00000507437 918 ntBASIC20.17■□□□□ 0.82
CHD9Q3L8U1 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.17■□□□□ 0.82
CHD9Q3L8U1 AC148477.8-201ENST00000624298 468 ntBASIC20.17■□□□□ 0.82
CHD9Q3L8U1 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.17■□□□□ 0.82
CHD9Q3L8U1 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
CHD9Q3L8U1 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHD9Q3L8U1 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHD9Q3L8U1 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHD9Q3L8U1 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHD9Q3L8U1 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.16■□□□□ 0.82
CHD9Q3L8U1 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 POLD2P1-201ENST00000511220 997 ntBASIC20.16■□□□□ 0.82
CHD9Q3L8U1 AP001005.1-201ENST00000571755 1248 ntBASIC20.16■□□□□ 0.82
CHD9Q3L8U1 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC20.16■□□□□ 0.82
CHD9Q3L8U1 AC099336.1-202ENST00000602961 463 ntBASIC20.16■□□□□ 0.82
CHD9Q3L8U1 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.16■□□□□ 0.82
CHD9Q3L8U1 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms