Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC19.41■□□□□ 0.7
COL4A3Q01955 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A3Q01955 TSSC2-201ENST00000450217 709 ntBASIC19.41■□□□□ 0.7
COL4A3Q01955 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A3Q01955 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A3Q01955 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A3Q01955 AC024243.1-201ENST00000609234 778 ntBASIC19.41■□□□□ 0.7
COL4A3Q01955 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A3Q01955 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A3Q01955 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.41■□□□□ 0.7
COL4A3Q01955 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A3Q01955 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
COL4A3Q01955 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.4■□□□□ 0.7
COL4A3Q01955 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.4■□□□□ 0.7
COL4A3Q01955 TPSP2-201ENST00000561760 610 ntBASIC19.4■□□□□ 0.7
COL4A3Q01955 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
COL4A3Q01955 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.4■□□□□ 0.7
COL4A3Q01955 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.4■□□□□ 0.7
COL4A3Q01955 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
COL4A3Q01955 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
COL4A3Q01955 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
COL4A3Q01955 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.4■□□□□ 0.7
COL4A3Q01955 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.4■□□□□ 0.7
COL4A3Q01955 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
COL4A3Q01955 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 SEC1P-202ENST00000473944 940 ntBASIC19.4■□□□□ 0.7
COL4A3Q01955 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.4■□□□□ 0.7
COL4A3Q01955 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.4■□□□□ 0.7
COL4A3Q01955 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
COL4A3Q01955 AL671883.3-201ENST00000603274 991 ntBASIC19.4■□□□□ 0.7
COL4A3Q01955 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A3Q01955 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.7
COL4A3Q01955 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
COL4A3Q01955 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.39■□□□□ 0.69
COL4A3Q01955 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
COL4A3Q01955 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A3Q01955 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A3Q01955 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A3Q01955 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A3Q01955 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
COL4A3Q01955 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
COL4A3Q01955 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.39■□□□□ 0.69
COL4A3Q01955 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.39■□□□□ 0.69
COL4A3Q01955 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A3Q01955 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A3Q01955 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
COL4A3Q01955 TSPY12P-201ENST00000421279 868 ntBASIC19.39■□□□□ 0.69
COL4A3Q01955 BX276092.5-203ENST00000456199 560 ntBASIC19.39■□□□□ 0.69
COL4A3Q01955 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.39■□□□□ 0.69
COL4A3Q01955 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.39■□□□□ 0.69
COL4A3Q01955 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.39■□□□□ 0.69
COL4A3Q01955 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
COL4A3Q01955 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
COL4A3Q01955 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.39■□□□□ 0.69
COL4A3Q01955 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A3Q01955 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
COL4A3Q01955 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A3Q01955 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.39■□□□□ 0.69
COL4A3Q01955 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A3Q01955 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
COL4A3Q01955 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
COL4A3Q01955 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A3Q01955 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.38■□□□□ 0.69
COL4A3Q01955 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A3Q01955 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A3Q01955 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A3Q01955 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A3Q01955 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
COL4A3Q01955 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A3Q01955 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.38■□□□□ 0.69
COL4A3Q01955 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.38■□□□□ 0.69
COL4A3Q01955 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
COL4A3Q01955 Z82202.1-201ENST00000623446 1880 ntBASIC19.38■□□□□ 0.69
COL4A3Q01955 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.38■□□□□ 0.69
COL4A3Q01955 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A3Q01955 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A3Q01955 AC112907.3-201ENST00000577781 2400 ntBASIC19.38■□□□□ 0.69
COL4A3Q01955 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.38■□□□□ 0.69
COL4A3Q01955 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
COL4A3Q01955 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A3Q01955 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL4A3Q01955 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms