Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SUMO3P55854 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.27■□□□□ 0.35
SUMO3P55854 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.26■□□□□ 0.35
SUMO3P55854 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
SUMO3P55854 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.26■□□□□ 0.35
SUMO3P55854 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.26■□□□□ 0.35
SUMO3P55854 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
SUMO3P55854 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.26■□□□□ 0.35
SUMO3P55854 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.26■□□□□ 0.35
SUMO3P55854 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.26■□□□□ 0.35
SUMO3P55854 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.26■□□□□ 0.35
SUMO3P55854 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
SUMO3P55854 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.26■□□□□ 0.35
SUMO3P55854 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.26■□□□□ 0.35
SUMO3P55854 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.26■□□□□ 0.35
SUMO3P55854 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.26■□□□□ 0.35
SUMO3P55854 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
SUMO3P55854 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SUMO3P55854 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SUMO3P55854 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
SUMO3P55854 AC018445.3-201ENST00000624177 1945 ntBASIC17.25■□□□□ 0.35
SUMO3P55854 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SUMO3P55854 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.25■□□□□ 0.35
SUMO3P55854 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SUMO3P55854 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SUMO3P55854 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SUMO3P55854 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SUMO3P55854 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.25■□□□□ 0.35
SUMO3P55854 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.25■□□□□ 0.35
SUMO3P55854 CRYGFP-201ENST00000418459 633 ntBASIC17.25■□□□□ 0.35
SUMO3P55854 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.25■□□□□ 0.35
SUMO3P55854 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.25■□□□□ 0.35
SUMO3P55854 AL355075.4-201ENST00000554988 638 ntBASIC17.25■□□□□ 0.35
SUMO3P55854 FITM1-202ENST00000559294 800 ntBASIC17.25■□□□□ 0.35
SUMO3P55854 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.25■□□□□ 0.35
SUMO3P55854 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.25■□□□□ 0.35
SUMO3P55854 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SUMO3P55854 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.25■□□□□ 0.35
SUMO3P55854 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SUMO3P55854 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SUMO3P55854 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
SUMO3P55854 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SUMO3P55854 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SUMO3P55854 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SUMO3P55854 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
SUMO3P55854 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
SUMO3P55854 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SUMO3P55854 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SUMO3P55854 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SUMO3P55854 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
SUMO3P55854 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SUMO3P55854 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SUMO3P55854 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.24■□□□□ 0.35
SUMO3P55854 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SUMO3P55854 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SUMO3P55854 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.24■□□□□ 0.35
SUMO3P55854 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.24■□□□□ 0.35
SUMO3P55854 AC083906.6-201ENST00000641366 219 ntBASIC17.24■□□□□ 0.35
SUMO3P55854 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SUMO3P55854 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SUMO3P55854 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.24■□□□□ 0.35
SUMO3P55854 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SUMO3P55854 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SUMO3P55854 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SUMO3P55854 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SUMO3P55854 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SUMO3P55854 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.24■□□□□ 0.35
SUMO3P55854 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SUMO3P55854 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SUMO3P55854 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SUMO3P55854 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.23■□□□□ 0.35
SUMO3P55854 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SUMO3P55854 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.23■□□□□ 0.35
SUMO3P55854 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SUMO3P55854 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SUMO3P55854 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SUMO3P55854 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SUMO3P55854 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.23■□□□□ 0.35
SUMO3P55854 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.23■□□□□ 0.35
SUMO3P55854 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms