Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.98■■□□□ 1.11
HMGCS2P54868 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGCS2P54868 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HMGCS2P54868 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC21.98■■□□□ 1.11
HMGCS2P54868 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HMGCS2P54868 TSSC2-201ENST00000450217 709 ntBASIC21.98■■□□□ 1.11
HMGCS2P54868 SEC1P-202ENST00000473944 940 ntBASIC21.98■■□□□ 1.11
HMGCS2P54868 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC21.98■■□□□ 1.11
HMGCS2P54868 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGCS2P54868 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC21.98■■□□□ 1.11
HMGCS2P54868 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
HMGCS2P54868 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC21.98■■□□□ 1.11
HMGCS2P54868 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC21.98■■□□□ 1.11
HMGCS2P54868 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGCS2P54868 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HMGCS2P54868 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGCS2P54868 AC016734.2-201ENST00000624325 1377 ntBASIC21.98■■□□□ 1.11
HMGCS2P54868 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGCS2P54868 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGCS2P54868 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC21.97■■□□□ 1.11
HMGCS2P54868 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGCS2P54868 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGCS2P54868 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGCS2P54868 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGCS2P54868 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGCS2P54868 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
HMGCS2P54868 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.97■■□□□ 1.11
HMGCS2P54868 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGCS2P54868 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
HMGCS2P54868 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC21.97■■□□□ 1.11
HMGCS2P54868 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC21.97■■□□□ 1.11
HMGCS2P54868 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC21.97■■□□□ 1.11
HMGCS2P54868 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC21.97■■□□□ 1.11
HMGCS2P54868 MIR3652-201ENST00000579335 131 ntBASIC21.97■■□□□ 1.11
HMGCS2P54868 PRR29-207ENST00000580752 458 ntTSL 3 BASIC21.97■■□□□ 1.11
HMGCS2P54868 AC079602.3-201ENST00000623931 403 ntBASIC21.97■■□□□ 1.11
HMGCS2P54868 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC21.97■■□□□ 1.11
HMGCS2P54868 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGCS2P54868 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGCS2P54868 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGCS2P54868 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HMGCS2P54868 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGCS2P54868 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGCS2P54868 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGCS2P54868 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HMGCS2P54868 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGCS2P54868 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
HMGCS2P54868 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.96■■□□□ 1.11
HMGCS2P54868 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGCS2P54868 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGCS2P54868 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGCS2P54868 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC21.96■■□□□ 1.11
HMGCS2P54868 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC21.96■■□□□ 1.11
HMGCS2P54868 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC21.96■■□□□ 1.11
HMGCS2P54868 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGCS2P54868 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGCS2P54868 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGCS2P54868 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
HMGCS2P54868 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.11
HMGCS2P54868 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.11
HMGCS2P54868 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGCS2P54868 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGCS2P54868 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
HMGCS2P54868 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.95■■□□□ 1.1
HMGCS2P54868 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGCS2P54868 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGCS2P54868 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGCS2P54868 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGCS2P54868 BX276092.5-203ENST00000456199 560 ntBASIC21.95■■□□□ 1.1
HMGCS2P54868 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC21.95■■□□□ 1.1
HMGCS2P54868 SKP2-204ENST00000508514 821 ntTSL 3 BASIC21.95■■□□□ 1.1
HMGCS2P54868 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC21.95■■□□□ 1.1
HMGCS2P54868 PRELID1P1-202ENST00000567272 903 ntBASIC21.95■■□□□ 1.1
HMGCS2P54868 MIR3180-1-201ENST00000580374 94 ntBASIC21.95■■□□□ 1.1
HMGCS2P54868 MIR3180-3-201ENST00000584616 94 ntBASIC21.95■■□□□ 1.1
HMGCS2P54868 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC21.95■■□□□ 1.1
HMGCS2P54868 AL121672.3-201ENST00000608644 468 ntBASIC21.95■■□□□ 1.1
HMGCS2P54868 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGCS2P54868 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGCS2P54868 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
HMGCS2P54868 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.95■■□□□ 1.1
HMGCS2P54868 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGCS2P54868 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGCS2P54868 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HMGCS2P54868 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
HMGCS2P54868 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGCS2P54868 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
HMGCS2P54868 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGCS2P54868 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.94■■□□□ 1.1
HMGCS2P54868 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGCS2P54868 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC21.94■■□□□ 1.1
HMGCS2P54868 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
HMGCS2P54868 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGCS2P54868 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
HMGCS2P54868 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.94■■□□□ 1.1
HMGCS2P54868 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGCS2P54868 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
HMGCS2P54868 GRAMD4P1-201ENST00000435181 1110 ntBASIC21.94■■□□□ 1.1
HMGCS2P54868 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC21.94■■□□□ 1.1
HMGCS2P54868 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms