Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
EPHB3P54753 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
EPHB3P54753 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.88■□□□□ 0.77
EPHB3P54753 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
EPHB3P54753 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.88■□□□□ 0.77
EPHB3P54753 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.88■□□□□ 0.77
EPHB3P54753 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
EPHB3P54753 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
EPHB3P54753 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
EPHB3P54753 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
EPHB3P54753 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
EPHB3P54753 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
EPHB3P54753 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.88■□□□□ 0.77
EPHB3P54753 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
EPHB3P54753 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
EPHB3P54753 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
EPHB3P54753 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
EPHB3P54753 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.88■□□□□ 0.77
EPHB3P54753 AC112907.2-201ENST00000448639 330 ntBASIC19.88■□□□□ 0.77
EPHB3P54753 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
EPHB3P54753 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.88■□□□□ 0.77
EPHB3P54753 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
EPHB3P54753 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
EPHB3P54753 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
EPHB3P54753 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.88■□□□□ 0.77
EPHB3P54753 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
EPHB3P54753 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
EPHB3P54753 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
EPHB3P54753 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
EPHB3P54753 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
EPHB3P54753 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
EPHB3P54753 IER3-202ENST00000376377 1350 ntBASIC19.87■□□□□ 0.77
EPHB3P54753 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
EPHB3P54753 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
EPHB3P54753 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
EPHB3P54753 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
EPHB3P54753 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
EPHB3P54753 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.87■□□□□ 0.77
EPHB3P54753 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.87■□□□□ 0.77
EPHB3P54753 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.87■□□□□ 0.77
EPHB3P54753 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.87■□□□□ 0.77
EPHB3P54753 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.87■□□□□ 0.77
EPHB3P54753 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
EPHB3P54753 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
EPHB3P54753 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
EPHB3P54753 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
EPHB3P54753 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.86■□□□□ 0.77
EPHB3P54753 KRT8P3-201ENST00000519669 1449 ntBASIC19.86■□□□□ 0.77
EPHB3P54753 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.86■□□□□ 0.77
EPHB3P54753 TREX1-205ENST00000625293 1783 ntBASIC19.86■□□□□ 0.77
EPHB3P54753 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.86■□□□□ 0.77
EPHB3P54753 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
EPHB3P54753 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
EPHB3P54753 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
EPHB3P54753 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
EPHB3P54753 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
EPHB3P54753 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
EPHB3P54753 AL023284.2-201ENST00000405850 579 ntBASIC19.86■□□□□ 0.77
EPHB3P54753 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
EPHB3P54753 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
EPHB3P54753 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.86■□□□□ 0.77
EPHB3P54753 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.86■□□□□ 0.77
EPHB3P54753 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
EPHB3P54753 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.86■□□□□ 0.77
EPHB3P54753 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
EPHB3P54753 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
EPHB3P54753 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
EPHB3P54753 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
EPHB3P54753 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
EPHB3P54753 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
EPHB3P54753 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.85■□□□□ 0.77
EPHB3P54753 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.85■□□□□ 0.77
EPHB3P54753 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
EPHB3P54753 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.85■□□□□ 0.77
EPHB3P54753 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
EPHB3P54753 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
EPHB3P54753 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.85■□□□□ 0.77
EPHB3P54753 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
EPHB3P54753 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
EPHB3P54753 MCCD1P1-208ENST00000445732 328 ntBASIC19.85■□□□□ 0.77
EPHB3P54753 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.85■□□□□ 0.77
EPHB3P54753 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.85■□□□□ 0.77
EPHB3P54753 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
EPHB3P54753 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
EPHB3P54753 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
EPHB3P54753 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.85■□□□□ 0.77
EPHB3P54753 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.85■□□□□ 0.77
EPHB3P54753 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
EPHB3P54753 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
EPHB3P54753 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
EPHB3P54753 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
EPHB3P54753 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.85■□□□□ 0.77
EPHB3P54753 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
EPHB3P54753 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
EPHB3P54753 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
EPHB3P54753 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.85■□□□□ 0.77
EPHB3P54753 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.84■□□□□ 0.77
EPHB3P54753 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.84■□□□□ 0.77
EPHB3P54753 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
EPHB3P54753 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms