Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
USF1P22415 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
USF1P22415 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC16.12■□□□□ 0.17
USF1P22415 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
USF1P22415 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
USF1P22415 AC092338.2-201ENST00000568827 1415 ntBASIC16.12■□□□□ 0.17
USF1P22415 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
USF1P22415 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
USF1P22415 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
USF1P22415 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.12■□□□□ 0.17
USF1P22415 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
USF1P22415 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC16.12■□□□□ 0.17
USF1P22415 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
USF1P22415 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.12■□□□□ 0.17
USF1P22415 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
USF1P22415 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC16.12■□□□□ 0.17
USF1P22415 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.12■□□□□ 0.17
USF1P22415 TSPY5P-201ENST00000426936 936 ntBASIC16.12■□□□□ 0.17
USF1P22415 UPK3BP1-201ENST00000428678 509 ntBASIC16.12■□□□□ 0.17
USF1P22415 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.12■□□□□ 0.17
USF1P22415 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.12■□□□□ 0.17
USF1P22415 YBX1P2-201ENST00000489612 999 ntBASIC16.12■□□□□ 0.17
USF1P22415 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.12■□□□□ 0.17
USF1P22415 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
USF1P22415 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
USF1P22415 AL358472.4-201ENST00000633140 710 ntBASIC16.12■□□□□ 0.17
USF1P22415 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
USF1P22415 AL031432.5-201ENST00000641059 760 ntBASIC16.12■□□□□ 0.17
USF1P22415 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC16.12■□□□□ 0.17
USF1P22415 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
USF1P22415 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC16.12■□□□□ 0.17
USF1P22415 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
USF1P22415 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
USF1P22415 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
USF1P22415 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
USF1P22415 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
USF1P22415 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
USF1P22415 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC16.11■□□□□ 0.17
USF1P22415 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
USF1P22415 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
USF1P22415 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
USF1P22415 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
USF1P22415 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
USF1P22415 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
USF1P22415 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
USF1P22415 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
USF1P22415 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
USF1P22415 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
USF1P22415 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
USF1P22415 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.11■□□□□ 0.17
USF1P22415 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
USF1P22415 GXYLT1P6-201ENST00000456472 1187 ntBASIC16.11■□□□□ 0.17
USF1P22415 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.11■□□□□ 0.17
USF1P22415 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC16.11■□□□□ 0.17
USF1P22415 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
USF1P22415 AC141257.4-201ENST00000634557 245 ntBASIC16.11■□□□□ 0.17
USF1P22415 AC136944.6-201ENST00000634818 245 ntBASIC16.11■□□□□ 0.17
USF1P22415 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
USF1P22415 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
USF1P22415 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
USF1P22415 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC16.11■□□□□ 0.17
USF1P22415 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC16.11■□□□□ 0.17
USF1P22415 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
USF1P22415 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
USF1P22415 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
USF1P22415 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
USF1P22415 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
USF1P22415 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
USF1P22415 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC16.11■□□□□ 0.17
USF1P22415 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC16.1■□□□□ 0.17
USF1P22415 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
USF1P22415 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
USF1P22415 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
USF1P22415 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
USF1P22415 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC16.1■□□□□ 0.17
USF1P22415 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
USF1P22415 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
USF1P22415 GLRB-205ENST00000512619 728 ntTSL 3 BASIC16.1■□□□□ 0.17
USF1P22415 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC16.1■□□□□ 0.17
USF1P22415 AL353719.1-201ENST00000566847 864 ntBASIC16.1■□□□□ 0.17
USF1P22415 AL023803.3-201ENST00000615559 522 ntBASIC16.1■□□□□ 0.17
USF1P22415 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
USF1P22415 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
USF1P22415 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
USF1P22415 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
USF1P22415 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC16.1■□□□□ 0.17
USF1P22415 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
USF1P22415 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC16.1■□□□□ 0.17
USF1P22415 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
USF1P22415 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
USF1P22415 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC16.09■□□□□ 0.17
USF1P22415 GOLGA2P11-201ENST00000562660 1621 ntBASIC16.09■□□□□ 0.17
USF1P22415 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
USF1P22415 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
USF1P22415 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC16.09■□□□□ 0.17
USF1P22415 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
USF1P22415 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
USF1P22415 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
USF1P22415 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
USF1P22415 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms