Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC25.19■■□□□ 1.62
COL3A1P02461 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL3A1P02461 FAM8A6P-201ENST00000407496 1135 ntBASIC25.19■■□□□ 1.62
COL3A1P02461 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC25.19■■□□□ 1.62
COL3A1P02461 COX11P1-201ENST00000489116 835 ntBASIC25.19■■□□□ 1.62
COL3A1P02461 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC25.19■■□□□ 1.62
COL3A1P02461 MIR3180-5-201ENST00000583743 153 ntBASIC25.19■■□□□ 1.62
COL3A1P02461 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
COL3A1P02461 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL3A1P02461 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC25.19■■□□□ 1.62
COL3A1P02461 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC25.19■■□□□ 1.62
COL3A1P02461 MTMR9LP-203ENST00000426597 1545 ntBASIC25.19■■□□□ 1.62
COL3A1P02461 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC25.19■■□□□ 1.62
COL3A1P02461 SLC25A24-204ENST00000569674 2357 ntBASIC25.18■■□□□ 1.62
COL3A1P02461 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
COL3A1P02461 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
COL3A1P02461 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
COL3A1P02461 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
COL3A1P02461 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
COL3A1P02461 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
COL3A1P02461 AK4P3-201ENST00000418260 669 ntBASIC25.18■■□□□ 1.62
COL3A1P02461 SPDYE15P-201ENST00000424157 909 ntBASIC25.18■■□□□ 1.62
COL3A1P02461 MCCD1P1-208ENST00000445732 328 ntBASIC25.18■■□□□ 1.62
COL3A1P02461 KRT18P38-201ENST00000449496 1282 ntBASIC25.18■■□□□ 1.62
COL3A1P02461 CD81-212ENST00000526072 1172 ntTSL 5 BASIC25.18■■□□□ 1.62
COL3A1P02461 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC25.18■■□□□ 1.62
COL3A1P02461 AC068587.9-201ENST00000641814 219 ntBASIC25.18■■□□□ 1.62
COL3A1P02461 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC25.18■■□□□ 1.62
COL3A1P02461 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
COL3A1P02461 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC25.18■■□□□ 1.62
COL3A1P02461 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
COL3A1P02461 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
COL3A1P02461 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
COL3A1P02461 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC25.17■■□□□ 1.62
COL3A1P02461 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
COL3A1P02461 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
COL3A1P02461 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
COL3A1P02461 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
COL3A1P02461 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC25.17■■□□□ 1.62
COL3A1P02461 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC25.17■■□□□ 1.62
COL3A1P02461 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
COL3A1P02461 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
COL3A1P02461 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC25.17■■□□□ 1.62
COL3A1P02461 BX664615.1-201ENST00000443558 458 ntBASIC25.17■■□□□ 1.62
COL3A1P02461 AL049597.2-201ENST00000565575 961 ntBASIC25.17■■□□□ 1.62
COL3A1P02461 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC25.17■■□□□ 1.62
COL3A1P02461 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
COL3A1P02461 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC25.17■■□□□ 1.62
COL3A1P02461 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
COL3A1P02461 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC25.17■■□□□ 1.62
COL3A1P02461 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC25.17■■□□□ 1.62
COL3A1P02461 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
COL3A1P02461 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC25.17■■□□□ 1.62
COL3A1P02461 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
COL3A1P02461 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC25.16■■□□□ 1.62
COL3A1P02461 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC25.16■■□□□ 1.62
COL3A1P02461 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC25.16■■□□□ 1.62
COL3A1P02461 ETFA-216ENST00000560726 942 ntTSL 3 BASIC25.16■■□□□ 1.62
COL3A1P02461 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC25.16■■□□□ 1.62
COL3A1P02461 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
COL3A1P02461 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC25.16■■□□□ 1.62
COL3A1P02461 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
COL3A1P02461 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
COL3A1P02461 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC25.16■■□□□ 1.62
COL3A1P02461 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
COL3A1P02461 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC25.16■■□□□ 1.62
COL3A1P02461 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
COL3A1P02461 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
COL3A1P02461 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL3A1P02461 AL109659.2-201ENST00000606809 1674 ntBASIC25.15■■□□□ 1.62
COL3A1P02461 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL3A1P02461 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL3A1P02461 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC25.15■■□□□ 1.62
COL3A1P02461 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL3A1P02461 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
COL3A1P02461 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC25.15■■□□□ 1.62
COL3A1P02461 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL3A1P02461 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL3A1P02461 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC25.15■■□□□ 1.62
COL3A1P02461 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC25.15■■□□□ 1.62
COL3A1P02461 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC25.15■■□□□ 1.62
COL3A1P02461 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
COL3A1P02461 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
COL3A1P02461 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL3A1P02461 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL3A1P02461 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC25.15■■□□□ 1.62
COL3A1P02461 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC25.15■■□□□ 1.62
COL3A1P02461 ENSA-205ENST00000361532 792 ntTSL 2 BASIC25.15■■□□□ 1.62
COL3A1P02461 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC25.15■■□□□ 1.62
COL3A1P02461 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
COL3A1P02461 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC25.15■■□□□ 1.62
COL3A1P02461 AL512604.3-201ENST00000569583 964 ntBASIC25.15■■□□□ 1.62
COL3A1P02461 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC25.15■■□□□ 1.62
COL3A1P02461 AC083849.1-201ENST00000615227 514 ntBASIC25.15■■□□□ 1.62
COL3A1P02461 AC011558.1-201ENST00000623459 338 ntBASIC25.15■■□□□ 1.62
COL3A1P02461 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL3A1P02461 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
COL3A1P02461 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
COL3A1P02461 PTGES2-AS1-201ENST00000443493 2100 ntBASIC25.14■■□□□ 1.62
COL3A1P02461 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms