Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC28A1O00337 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.34■□□□□ 0.53
SLC28A1O00337 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.34■□□□□ 0.53
SLC28A1O00337 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.34■□□□□ 0.53
SLC28A1O00337 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC28A1O00337 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC28A1O00337 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
SLC28A1O00337 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC28A1O00337 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.34■□□□□ 0.53
SLC28A1O00337 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.34■□□□□ 0.53
SLC28A1O00337 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC28A1O00337 WIZP1-201ENST00000531444 2299 ntBASIC18.34■□□□□ 0.53
SLC28A1O00337 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.34■□□□□ 0.53
SLC28A1O00337 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
SLC28A1O00337 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC28A1O00337 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC28A1O00337 NEFHP1-201ENST00000412845 2629 ntBASIC18.34■□□□□ 0.53
SLC28A1O00337 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.34■□□□□ 0.53
SLC28A1O00337 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SLC28A1O00337 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.33■□□□□ 0.53
SLC28A1O00337 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.33■□□□□ 0.53
SLC28A1O00337 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SLC28A1O00337 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.33■□□□□ 0.53
SLC28A1O00337 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.33■□□□□ 0.53
SLC28A1O00337 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SLC28A1O00337 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SLC28A1O00337 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.33■□□□□ 0.53
SLC28A1O00337 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SLC28A1O00337 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.33■□□□□ 0.53
SLC28A1O00337 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
SLC28A1O00337 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SLC28A1O00337 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.33■□□□□ 0.53
SLC28A1O00337 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SLC28A1O00337 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SLC28A1O00337 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SLC28A1O00337 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SLC28A1O00337 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SLC28A1O00337 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SLC28A1O00337 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SLC28A1O00337 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.33■□□□□ 0.52
SLC28A1O00337 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.33■□□□□ 0.52
SLC28A1O00337 AP003097.1-201ENST00000530657 1135 ntBASIC18.33■□□□□ 0.52
SLC28A1O00337 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SLC28A1O00337 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.33■□□□□ 0.52
SLC28A1O00337 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.33■□□□□ 0.52
SLC28A1O00337 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SLC28A1O00337 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
SLC28A1O00337 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SLC28A1O00337 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SLC28A1O00337 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SLC28A1O00337 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SLC28A1O00337 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SLC28A1O00337 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SLC28A1O00337 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SLC28A1O00337 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SLC28A1O00337 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SLC28A1O00337 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SLC28A1O00337 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SLC28A1O00337 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SLC28A1O00337 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.32■□□□□ 0.52
SLC28A1O00337 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SLC28A1O00337 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.32■□□□□ 0.52
SLC28A1O00337 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SLC28A1O00337 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SLC28A1O00337 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SLC28A1O00337 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SLC28A1O00337 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SLC28A1O00337 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.32■□□□□ 0.52
SLC28A1O00337 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
SLC28A1O00337 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SLC28A1O00337 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.32■□□□□ 0.52
SLC28A1O00337 TSPY23P-201ENST00000440136 739 ntBASIC18.32■□□□□ 0.52
SLC28A1O00337 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.32■□□□□ 0.52
SLC28A1O00337 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.32■□□□□ 0.52
SLC28A1O00337 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SLC28A1O00337 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.32■□□□□ 0.52
SLC28A1O00337 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SLC28A1O00337 MTDHP1-201ENST00000605323 784 ntBASIC18.32■□□□□ 0.52
SLC28A1O00337 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.32■□□□□ 0.52
SLC28A1O00337 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SLC28A1O00337 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.32■□□□□ 0.52
SLC28A1O00337 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SLC28A1O00337 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.32■□□□□ 0.52
SLC28A1O00337 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.32■□□□□ 0.52
SLC28A1O00337 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.32■□□□□ 0.52
SLC28A1O00337 AC090164.3-201ENST00000610780 2143 ntBASIC18.32■□□□□ 0.52
SLC28A1O00337 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SLC28A1O00337 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.32■□□□□ 0.52
SLC28A1O00337 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SLC28A1O00337 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SLC28A1O00337 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.32■□□□□ 0.52
SLC28A1O00337 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SLC28A1O00337 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.32■□□□□ 0.52
SLC28A1O00337 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SLC28A1O00337 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SLC28A1O00337 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SLC28A1O00337 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SLC28A1O00337 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SLC28A1O00337 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SLC28A1O00337 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms