Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A5A8TX70 MINOS1P3-201ENST00000457048 203 ntBASIC14.78□□□□□ -0.04
COL6A5A8TX70 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC14.78□□□□□ -0.04
COL6A5A8TX70 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A5A8TX70 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC14.78□□□□□ -0.04
COL6A5A8TX70 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A5A8TX70 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A5A8TX70 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
COL6A5A8TX70 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A5A8TX70 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A5A8TX70 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A5A8TX70 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC14.78□□□□□ -0.04
COL6A5A8TX70 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A5A8TX70 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A5A8TX70 BUB3-202ENST00000368859 667 ntTSL 3 BASIC14.78□□□□□ -0.04
COL6A5A8TX70 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
COL6A5A8TX70 AC023274.1-201ENST00000418278 595 ntBASIC14.78□□□□□ -0.04
COL6A5A8TX70 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
COL6A5A8TX70 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC14.78□□□□□ -0.04
COL6A5A8TX70 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.78□□□□□ -0.04
COL6A5A8TX70 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC14.78□□□□□ -0.04
COL6A5A8TX70 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC14.78□□□□□ -0.04
COL6A5A8TX70 AC040169.1-201ENST00000565382 521 ntBASIC14.78□□□□□ -0.04
COL6A5A8TX70 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A5A8TX70 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC14.78□□□□□ -0.04
COL6A5A8TX70 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
COL6A5A8TX70 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A5A8TX70 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A5A8TX70 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A5A8TX70 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL6A5A8TX70 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL6A5A8TX70 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
COL6A5A8TX70 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC14.77□□□□□ -0.04
COL6A5A8TX70 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL6A5A8TX70 HLA-J-201ENST00000462773 1622 ntBASIC14.77□□□□□ -0.04
COL6A5A8TX70 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL6A5A8TX70 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL6A5A8TX70 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC14.77□□□□□ -0.04
COL6A5A8TX70 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL6A5A8TX70 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC14.77□□□□□ -0.04
COL6A5A8TX70 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
COL6A5A8TX70 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC14.77□□□□□ -0.04
COL6A5A8TX70 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC14.77□□□□□ -0.04
COL6A5A8TX70 AL592071.1-201ENST00000611956 408 ntBASIC14.77□□□□□ -0.04
COL6A5A8TX70 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL6A5A8TX70 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL6A5A8TX70 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC14.77□□□□□ -0.04
COL6A5A8TX70 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
COL6A5A8TX70 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL6A5A8TX70 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL6A5A8TX70 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL6A5A8TX70 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC14.77□□□□□ -0.05
COL6A5A8TX70 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL6A5A8TX70 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL6A5A8TX70 RNA5SP415-201ENST00000517246 115 ntBASIC14.77□□□□□ -0.05
COL6A5A8TX70 PUDP-206ENST00000540122 825 ntTSL 2 BASIC14.77□□□□□ -0.05
COL6A5A8TX70 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC14.77□□□□□ -0.05
COL6A5A8TX70 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC14.77□□□□□ -0.05
COL6A5A8TX70 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL6A5A8TX70 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.76□□□□□ -0.05
COL6A5A8TX70 PARN-205ENST00000539279 1557 ntTSL 2 BASIC14.76□□□□□ -0.05
COL6A5A8TX70 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC14.76□□□□□ -0.05
COL6A5A8TX70 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A5A8TX70 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A5A8TX70 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A5A8TX70 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A5A8TX70 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A5A8TX70 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A5A8TX70 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC14.76□□□□□ -0.05
COL6A5A8TX70 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A5A8TX70 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A5A8TX70 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A5A8TX70 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A5A8TX70 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
COL6A5A8TX70 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A5A8TX70 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A5A8TX70 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A5A8TX70 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC14.76□□□□□ -0.05
COL6A5A8TX70 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC14.76□□□□□ -0.05
COL6A5A8TX70 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC14.76□□□□□ -0.05
COL6A5A8TX70 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.76□□□□□ -0.05
COL6A5A8TX70 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC14.76□□□□□ -0.05
COL6A5A8TX70 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A5A8TX70 MIR1199-201ENST00000621445 119 ntBASIC14.76□□□□□ -0.05
COL6A5A8TX70 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC14.76□□□□□ -0.05
COL6A5A8TX70 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A5A8TX70 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A5A8TX70 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A5A8TX70 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC14.75□□□□□ -0.05
COL6A5A8TX70 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC14.75□□□□□ -0.05
COL6A5A8TX70 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A5A8TX70 PTMS-202ENST00000389462 773 ntTSL 2 BASIC14.75□□□□□ -0.05
COL6A5A8TX70 RPS2P1-201ENST00000434010 821 ntBASIC14.75□□□□□ -0.05
COL6A5A8TX70 AC132008.2-207ENST00000454517 770 ntBASIC14.75□□□□□ -0.05
COL6A5A8TX70 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC14.75□□□□□ -0.05
COL6A5A8TX70 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC14.75□□□□□ -0.05
COL6A5A8TX70 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A5A8TX70 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC14.75□□□□□ -0.05
COL6A5A8TX70 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC14.75□□□□□ -0.05
COL6A5A8TX70 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms