Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
NOD1Q9Y239 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.09□□□□□ -1.59
NOD1Q9Y239 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
NOD1Q9Y239 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
NOD1Q9Y239 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.09□□□□□ -1.59
NOD1Q9Y239 Y_RNA.200-201ENST00000364018 102 ntBASIC5.09□□□□□ -1.59
NOD1Q9Y239 RNU6-72P-201ENST00000384285 79 ntBASIC5.09□□□□□ -1.59
NOD1Q9Y239 Y_RNA.581-201ENST00000391017 97 ntBASIC5.09□□□□□ -1.59
NOD1Q9Y239 RNU6ATAC34P-201ENST00000408879 121 ntBASIC5.09□□□□□ -1.59
NOD1Q9Y239 Z82188.1-201ENST00000436709 154 ntBASIC5.09□□□□□ -1.59
NOD1Q9Y239 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.09□□□□□ -1.59
NOD1Q9Y239 RPL23AP93-201ENST00000440847 484 ntBASIC5.09□□□□□ -1.59
NOD1Q9Y239 snoU13.30-201ENST00000458951 104 ntBASIC5.09□□□□□ -1.59
NOD1Q9Y239 SCARNA10-201ENST00000459255 330 ntBASIC5.09□□□□□ -1.59
NOD1Q9Y239 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC5.09□□□□□ -1.59
NOD1Q9Y239 AC010265.1-201ENST00000513509 211 ntBASIC5.09□□□□□ -1.59
NOD1Q9Y239 SNORA31.8-201ENST00000516327 108 ntBASIC5.09□□□□□ -1.59
NOD1Q9Y239 RN7SKP272-201ENST00000516988 232 ntBASIC5.09□□□□□ -1.59
NOD1Q9Y239 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC5.09□□□□□ -1.59
NOD1Q9Y239 TRAV28-201ENST00000557548 323 ntBASIC5.09□□□□□ -1.59
NOD1Q9Y239 AC073657.2-201ENST00000605661 303 ntBASIC5.09□□□□□ -1.59
NOD1Q9Y239 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC5.09□□□□□ -1.59
NOD1Q9Y239 BX005214.3-202ENST00000619809 325 ntBASIC5.09□□□□□ -1.59
NOD1Q9Y239 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
NOD1Q9Y239 AC099506.2-201ENST00000623074 221 ntBASIC5.09□□□□□ -1.59
NOD1Q9Y239 AC027309.3-201ENST00000623419 351 ntBASIC5.09□□□□□ -1.59
NOD1Q9Y239 CCT7-217ENST00000626868 249 ntTSL 5 BASIC5.09□□□□□ -1.59
NOD1Q9Y239 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.09□□□□□ -1.59
NOD1Q9Y239 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.6
NOD1Q9Y239 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC5.09□□□□□ -1.6
NOD1Q9Y239 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC5.09□□□□□ -1.6
NOD1Q9Y239 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC5.09□□□□□ -1.6
NOD1Q9Y239 AL731532.2-201ENST00000623542 1953 ntBASIC5.09□□□□□ -1.6
NOD1Q9Y239 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
NOD1Q9Y239 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.6
NOD1Q9Y239 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
NOD1Q9Y239 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.6
NOD1Q9Y239 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC5.08□□□□□ -1.6
NOD1Q9Y239 AC233981.2-201ENST00000611524 1614 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
NOD1Q9Y239 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
NOD1Q9Y239 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC5.08□□□□□ -1.6
NOD1Q9Y239 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
NOD1Q9Y239 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
NOD1Q9Y239 AL157777.2-201ENST00000258070 137 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 RNU4-9P-201ENST00000364951 139 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 SNORD78.2-201ENST00000391076 69 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 RPS26P8-201ENST00000393490 348 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 SDHCP2-201ENST00000398565 501 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC5.08□□□□□ -1.6
NOD1Q9Y239 AL139156.1-201ENST00000412785 841 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC5.08□□□□□ -1.6
NOD1Q9Y239 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC5.08□□□□□ -1.6
NOD1Q9Y239 PHBP16-201ENST00000446318 950 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 RPL7AP28-201ENST00000464513 571 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC5.08□□□□□ -1.6
NOD1Q9Y239 RNU6-1012P-201ENST00000516606 109 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 FTH1P11-201ENST00000517577 551 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 MRPL49P2-201ENST00000521066 465 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 AC040958.1-201ENST00000561102 201 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 AC023824.2-201ENST00000566185 400 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC5.08□□□□□ -1.6
NOD1Q9Y239 VN1R85P-201ENST00000601587 426 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 ZYXP1-201ENST00000617638 118 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 SCARNA4-202ENST00000625402 129 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 U6.99-201ENST00000637524 83 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 PSMD5-AS1-215ENST00000640622 205 ntBASIC5.08□□□□□ -1.6
NOD1Q9Y239 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.08□□□□□ -1.6
NOD1Q9Y239 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC5.08□□□□□ -1.6
NOD1Q9Y239 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC5.08□□□□□ -1.6
NOD1Q9Y239 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
NOD1Q9Y239 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.07□□□□□ -1.6
NOD1Q9Y239 SNORD113-8-201ENST00000363497 74 ntBASIC5.07□□□□□ -1.6
NOD1Q9Y239 RNA5SP515-201ENST00000364570 118 ntBASIC5.07□□□□□ -1.6
NOD1Q9Y239 MIR1298-201ENST00000408783 112 ntBASIC5.07□□□□□ -1.6
NOD1Q9Y239 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC5.07□□□□□ -1.6
NOD1Q9Y239 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC5.07□□□□□ -1.6
NOD1Q9Y239 AL358453.1-201ENST00000422522 250 ntBASIC5.07□□□□□ -1.6
NOD1Q9Y239 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC5.07□□□□□ -1.6
NOD1Q9Y239 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC5.07□□□□□ -1.6
NOD1Q9Y239 AC124916.1-201ENST00000444020 547 ntBASIC5.07□□□□□ -1.6
NOD1Q9Y239 AC134698.5-201ENST00000519444 336 ntBASIC5.07□□□□□ -1.6
NOD1Q9Y239 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
NOD1Q9Y239 UBE2Q2P8-201ENST00000560644 102 ntBASIC5.07□□□□□ -1.6
NOD1Q9Y239 AC120057.2-201ENST00000571520 271 ntBASIC5.07□□□□□ -1.6
NOD1Q9Y239 MIR4659A-201ENST00000580269 81 ntBASIC5.07□□□□□ -1.6
NOD1Q9Y239 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.07□□□□□ -1.6
NOD1Q9Y239 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.07□□□□□ -1.6
NOD1Q9Y239 MAPK10-320ENST00000641462 6696 ntBASIC5.07□□□□□ -1.6
NOD1Q9Y239 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC5.07□□□□□ -1.6
NOD1Q9Y239 AC009541.1-201ENST00000438279 2662 ntBASIC5.07□□□□□ -1.6
NOD1Q9Y239 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
NOD1Q9Y239 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.06□□□□□ -1.6
NOD1Q9Y239 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.06□□□□□ -1.6
NOD1Q9Y239 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
NOD1Q9Y239 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
NOD1Q9Y239 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
NOD1Q9Y239 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
NOD1Q9Y239 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms