Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNU6-120P-201ENST00000516077 103 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 SCARNA15.2-201ENST00000516409 127 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 MYL12BP1-201ENST00000569826 507 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 AC016727.2-201ENST00000603988 621 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 AL355297.3-201ENST00000604082 446 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 AL355598.1-201ENST00000604169 202 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 MIR432-201ENST00000606207 94 ntBASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC87Q9NVE4 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 RNA5SP399-201ENST00000364003 117 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 RNU6-99P-201ENST00000364721 107 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 SNORD73A-201ENST00000386062 65 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 Z92545.1-201ENST00000411782 234 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 RPS29P4-201ENST00000414733 161 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 AL356867.1-201ENST00000429623 299 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 SNORD108-201ENST00000459332 71 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 U8.20-201ENST00000459445 131 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 RPS20P22-201ENST00000473700 357 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 AC022493.1-201ENST00000492984 337 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 AL359273.1-201ENST00000510918 627 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 RNA5SP471-201ENST00000516971 106 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 TRAV37-201ENST00000553906 342 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 MIR5195-201ENST00000583555 115 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 AC011471.1-201ENST00000585766 187 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 AL161798.1-201ENST00000604630 131 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 AC018889.1-201ENST00000605372 397 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 AC090425.1-201ENST00000610007 140 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 AL360181.4-201ENST00000621752 134 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 U6.105-201ENST00000637379 88 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 SCN1A-220ENST00000641603 12506 ntBASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC87Q9NVE4 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 AC139713.2-215ENST00000641428 5037 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 OR4G2P-202ENST00000641004 1759 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 Y_RNA.111-201ENST00000363248 100 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 RNU6-335P-201ENST00000364563 113 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 RNU6-629P-201ENST00000384061 103 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 Y_RNA.476-201ENST00000384347 108 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 RNU6-933P-201ENST00000384424 107 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 RNU6-823P-201ENST00000391042 103 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 RNU6-1109P-201ENST00000391187 107 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 AL096701.2-201ENST00000416920 238 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 AC079780.1-201ENST00000428259 207 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 RPS24P13-201ENST00000442520 397 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 AC073587.1-201ENST00000447093 876 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 RNU6-1037P-201ENST00000459571 107 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 AC022882.1-201ENST00000532142 501 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 HSBP1P1-201ENST00000555205 166 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 MIR4273-201ENST00000582824 84 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 Z98751.3-201ENST00000604447 521 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 U3.45-201ENST00000607547 219 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 AC064801.1-201ENST00000612025 407 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 AC131238.1-201ENST00000617135 328 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 MIR7702-201ENST00000621931 59 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 NAA50-211ENST00000630058 177 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 AC091812.1-201ENST00000432235 1948 ntBASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
CCDC87Q9NVE4 BBX-203ENST00000402543 3980 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 AC116096.1-201ENST00000566804 2314 ntBASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 MIR412-201ENST00000362142 91 ntBASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 RNA5SP97-201ENST00000365006 84 ntBASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 U3.15-201ENST00000365398 212 ntBASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 MIR195-201ENST00000385194 87 ntBASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 SNORA3.3-201ENST00000408712 125 ntBASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 AL158156.1-201ENST00000422509 473 ntBASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 AP000907.1-201ENST00000428428 510 ntBASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 AC069499.1-201ENST00000489433 509 ntBASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms