Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
DDX4Q9NQI0 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
DDX4Q9NQI0 RNU6-179P-201ENST00000363350 107 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 RNU4-48P-201ENST00000365559 182 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 RNU6-701P-201ENST00000384059 107 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 MIR1-2-201ENST00000384961 85 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 MIR9-1-201ENST00000385198 89 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 MIR454-201ENST00000390180 115 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 RPS4XP3-201ENST00000398541 413 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 RNA5SP38-201ENST00000410750 119 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 RNA5SP21-201ENST00000410917 96 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 HMGB1P27-201ENST00000431429 603 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.29□□□□□ -1.88
DDX4Q9NQI0 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.29□□□□□ -1.88
DDX4Q9NQI0 RPS20P22-201ENST00000473700 357 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 Y_RNA.693-201ENST00000516641 110 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 RN7SKP282-201ENST00000516824 299 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC3.29□□□□□ -1.88
DDX4Q9NQI0 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.29□□□□□ -1.88
DDX4Q9NQI0 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.29□□□□□ -1.88
DDX4Q9NQI0 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
DDX4Q9NQI0 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.29□□□□□ -1.88
DDX4Q9NQI0 AC002545.1-201ENST00000592511 181 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 AC025449.1-201ENST00000603896 529 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 AL121992.2-201ENST00000606262 256 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 AC008536.2-201ENST00000607284 349 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 AL589994.2-201ENST00000621124 579 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 AC243829.7-201ENST00000633081 225 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
DDX4Q9NQI0 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.29□□□□□ -1.88
DDX4Q9NQI0 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.29□□□□□ -1.88
DDX4Q9NQI0 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.29□□□□□ -1.88
DDX4Q9NQI0 AL021368.2-201ENST00000606125 5352 ntBASIC3.29□□□□□ -1.88
DDX4Q9NQI0 ZNF680P1-201ENST00000436625 1469 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 SMIM11P1-201ENST00000369586 178 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 RNU6-946P-201ENST00000383878 107 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 MIR512-1-201ENST00000384913 84 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 RN7SKP58-201ENST00000411010 305 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 OR51A5P-201ENST00000415429 942 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 MTCYBP5-201ENST00000423752 1135 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 NEFMP1-201ENST00000443423 1006 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 AC003071.1-201ENST00000451219 789 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 RPS3P1-201ENST00000456781 192 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 RNU7-182P-201ENST00000459009 62 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 RNU6-953P-201ENST00000459154 107 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 RPL37P6-201ENST00000460682 294 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 AC011352.1-201ENST00000512300 793 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 AC114781.4-201ENST00000513707 639 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 SNORA31.3-201ENST00000516029 96 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 RN7SKP43-201ENST00000516173 320 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 AP006587.4-201ENST00000526053 529 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 OR5AQ1P-201ENST00000527596 927 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 AL512360.1-201ENST00000555346 234 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 AC104763.2-201ENST00000604179 382 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 AC009570.1-201ENST00000609599 745 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 AL365204.3-201ENST00000612448 685 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 AP001486.3-201ENST00000615334 372 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 uc_338.11-201ENST00000619132 160 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 AP003122.6-201ENST00000623831 495 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 IGHVIII-44-202ENST00000636235 289 ntBASIC3.28□□□□□ -1.88
DDX4Q9NQI0 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
DDX4Q9NQI0 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.28□□□□□ -1.89
DDX4Q9NQI0 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.27□□□□□ -1.89
DDX4Q9NQI0 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
DDX4Q9NQI0 RNU6-188P-201ENST00000364207 107 ntBASIC3.27□□□□□ -1.89
DDX4Q9NQI0 RNU4-12P-201ENST00000365233 139 ntBASIC3.27□□□□□ -1.89
DDX4Q9NQI0 Y_RNA.402-201ENST00000383972 102 ntBASIC3.27□□□□□ -1.89
DDX4Q9NQI0 Y_RNA.554-201ENST00000384672 102 ntBASIC3.27□□□□□ -1.89
DDX4Q9NQI0 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
DDX4Q9NQI0 MIR548F1-201ENST00000408667 84 ntBASIC3.27□□□□□ -1.89
DDX4Q9NQI0 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.27□□□□□ -1.89
DDX4Q9NQI0 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC3.27□□□□□ -1.89
DDX4Q9NQI0 MTATP6P16-201ENST00000434543 526 ntBASIC3.27□□□□□ -1.89
DDX4Q9NQI0 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC3.27□□□□□ -1.89
DDX4Q9NQI0 AL031183.1-201ENST00000457667 207 ntBASIC3.27□□□□□ -1.89
DDX4Q9NQI0 RNU7-63P-201ENST00000459054 62 ntBASIC3.27□□□□□ -1.89
DDX4Q9NQI0 RNU6-261P-201ENST00000459506 102 ntBASIC3.27□□□□□ -1.89
DDX4Q9NQI0 RN7SL75P-201ENST00000461926 281 ntBASIC3.27□□□□□ -1.89
DDX4Q9NQI0 AC087588.1-201ENST00000462203 316 ntBASIC3.27□□□□□ -1.89
DDX4Q9NQI0 MRPS17P3-201ENST00000465453 385 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms