Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SSXP4-201ENST00000451349 245 ntBASIC0.11□□□□□ -2.39
VPS13AQ96RL7 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC0.11□□□□□ -2.39
VPS13AQ96RL7 AC015849.6-201ENST00000605454 474 ntBASIC0.11□□□□□ -2.39
VPS13AQ96RL7 AC012676.2-201ENST00000619258 186 ntBASIC0.11□□□□□ -2.39
VPS13AQ96RL7 AC114546.3-201ENST00000623582 1734 ntBASIC0.11□□□□□ -2.39
VPS13AQ96RL7 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC0.11□□□□□ -2.39
VPS13AQ96RL7 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC0.11□□□□□ -2.39
VPS13AQ96RL7 PSMC1P5-201ENST00000512850 177 ntBASIC0.11□□□□□ -2.39
VPS13AQ96RL7 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC0.11□□□□□ -2.39
VPS13AQ96RL7 MTND4P16-201ENST00000466108 1367 ntBASIC0.11□□□□□ -2.39
VPS13AQ96RL7 RNU6-989P-201ENST00000362756 107 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 RNU1-72P-201ENST00000362976 153 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 SNORA51.10-201ENST00000384418 136 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 Y_RNA.495-201ENST00000384435 112 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 CCNG1P1-201ENST00000406783 885 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 AP003049.1-201ENST00000529418 457 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC0.1□□□□□ -2.39
VPS13AQ96RL7 RNU6-349P-201ENST00000362402 107 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 RNU6-514P-201ENST00000384208 107 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 Y_RNA.514-201ENST00000384528 112 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC0.1□□□□□ -2.39
VPS13AQ96RL7 AP001893.2-201ENST00000526949 202 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 RNY1P9-201ENST00000532431 109 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 AC004987.4-201ENST00000603383 338 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC0.1□□□□□ -2.39
VPS13AQ96RL7 AC244023.1-201ENST00000426884 112 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 RPL23AP6-201ENST00000446637 472 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 AC016717.1-201ENST00000448918 286 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC0.1□□□□□ -2.39
VPS13AQ96RL7 NDUFB4P2-201ENST00000509515 391 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 LINC00933-203ENST00000559812 219 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 AC242498.1-201ENST00000604134 111 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.1□□□□□ -2.39
VPS13AQ96RL7 AC243994.1-201ENST00000618627 109 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 MIR6516-201ENST00000630554 81 ntBASIC0.1□□□□□ -2.39
VPS13AQ96RL7 RNU6-348P-201ENST00000384386 107 ntBASIC0.09□□□□□ -2.39
VPS13AQ96RL7 Y_RNA.559-201ENST00000384686 107 ntBASIC0.09□□□□□ -2.39
VPS13AQ96RL7 RNU2-64P-201ENST00000411315 191 ntBASIC0.09□□□□□ -2.39
VPS13AQ96RL7 NIFKP6-201ENST00000598115 845 ntBASIC0.09□□□□□ -2.39
VPS13AQ96RL7 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.09□□□□□ -2.39
VPS13AQ96RL7 ZNF33CP-201ENST00000432492 2030 ntBASIC0.09□□□□□ -2.4
VPS13AQ96RL7 RNU6-629P-201ENST00000384061 103 ntBASIC0.09□□□□□ -2.4
VPS13AQ96RL7 RNU6-1072P-201ENST00000384703 107 ntBASIC0.09□□□□□ -2.4
VPS13AQ96RL7 RNU6-443P-201ENST00000384780 107 ntBASIC0.09□□□□□ -2.4
VPS13AQ96RL7 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC0.09□□□□□ -2.4
VPS13AQ96RL7 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.09□□□□□ -2.4
VPS13AQ96RL7 RN7SKP287-201ENST00000516546 266 ntBASIC0.09□□□□□ -2.4
VPS13AQ96RL7 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC0.09□□□□□ -2.4
VPS13AQ96RL7 MIR3678-201ENST00000578455 94 ntBASIC0.09□□□□□ -2.4
VPS13AQ96RL7 SSR1P1-201ENST00000407630 814 ntBASIC0.08□□□□□ -2.4
VPS13AQ96RL7 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC0.08□□□□□ -2.4
VPS13AQ96RL7 HSPE1P21-201ENST00000438283 308 ntBASIC0.08□□□□□ -2.4
VPS13AQ96RL7 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC0.08□□□□□ -2.4
VPS13AQ96RL7 RPL21P47-201ENST00000483696 477 ntBASIC0.08□□□□□ -2.4
VPS13AQ96RL7 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.08□□□□□ -2.4
VPS13AQ96RL7 AC025465.4-201ENST00000513422 638 ntBASIC0.08□□□□□ -2.4
VPS13AQ96RL7 SNORD116-26-201ENST00000516006 96 ntBASIC0.08□□□□□ -2.4
VPS13AQ96RL7 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.08□□□□□ -2.4
VPS13AQ96RL7 TPTE2P6-202ENST00000445572 1007 ntBASIC0.08□□□□□ -2.4
VPS13AQ96RL7 FAM206BP-201ENST00000510179 541 ntBASIC0.08□□□□□ -2.4
VPS13AQ96RL7 AC009509.4-201ENST00000619202 509 ntBASIC0.08□□□□□ -2.4
VPS13AQ96RL7 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC0.08□□□□□ -2.4
VPS13AQ96RL7 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.08□□□□□ -2.4
VPS13AQ96RL7 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.08□□□□□ -2.4
VPS13AQ96RL7 MIR411-201ENST00000362239 96 ntBASIC0.08□□□□□ -2.4
VPS13AQ96RL7 RNU6-654P-201ENST00000364373 107 ntBASIC0.08□□□□□ -2.4
VPS13AQ96RL7 PIGFP2-201ENST00000421400 651 ntBASIC0.08□□□□□ -2.4
VPS13AQ96RL7 RPL7P31-201ENST00000450192 724 ntBASIC0.08□□□□□ -2.4
VPS13AQ96RL7 AC078857.1-201ENST00000469870 667 ntBASIC0.08□□□□□ -2.4
VPS13AQ96RL7 RPL22P13-201ENST00000493291 347 ntBASIC0.08□□□□□ -2.4
VPS13AQ96RL7 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC0.08□□□□□ -2.4
VPS13AQ96RL7 AC123767.1-202ENST00000620407 817 ntBASIC0.08□□□□□ -2.4
VPS13AQ96RL7 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.07□□□□□ -2.4
VPS13AQ96RL7 SNORA38-201ENST00000363946 132 ntBASIC0.07□□□□□ -2.4
VPS13AQ96RL7 AC092047.1-201ENST00000424997 240 ntBASIC0.07□□□□□ -2.4
VPS13AQ96RL7 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC0.07□□□□□ -2.4
VPS13AQ96RL7 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC0.07□□□□□ -2.4
VPS13AQ96RL7 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC0.07□□□□□ -2.4
VPS13AQ96RL7 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC0.07□□□□□ -2.4
VPS13AQ96RL7 MIR5093-201ENST00000583199 100 ntBASIC0.07□□□□□ -2.4
VPS13AQ96RL7 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC0.07□□□□□ -2.4
VPS13AQ96RL7 SNORD49B-201ENST00000365172 72 ntBASIC0.07□□□□□ -2.4
VPS13AQ96RL7 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC0.07□□□□□ -2.4
VPS13AQ96RL7 AC092634.2-201ENST00000428146 1010 ntBASIC0.07□□□□□ -2.4
VPS13AQ96RL7 SNORD108-201ENST00000459332 71 ntBASIC0.07□□□□□ -2.4
VPS13AQ96RL7 RNU6-889P-201ENST00000517189 103 ntBASIC0.07□□□□□ -2.4
VPS13AQ96RL7 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.07□□□□□ -2.4
VPS13AQ96RL7 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC0.06□□□□□ -2.4
VPS13AQ96RL7 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC0.06□□□□□ -2.4
VPS13AQ96RL7 PAXBP1P1-201ENST00000449315 447 ntBASIC0.06□□□□□ -2.4
VPS13AQ96RL7 AC069277.2-201ENST00000454211 432 ntBASIC0.06□□□□□ -2.4
VPS13AQ96RL7 SCARNA16.5-201ENST00000517114 183 ntBASIC0.06□□□□□ -2.4
VPS13AQ96RL7 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC0.06□□□□□ -2.4
VPS13AQ96RL7 NDUFB4P10-201ENST00000452541 359 ntBASIC0.06□□□□□ -2.4
VPS13AQ96RL7 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC0.06□□□□□ -2.4
VPS13AQ96RL7 AP005639.2-201ENST00000527592 928 ntBASIC0.06□□□□□ -2.4
VPS13AQ96RL7 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC0.06□□□□□ -2.4
VPS13AQ96RL7 RNU6-1327P-201ENST00000365302 105 ntBASIC0.05□□□□□ -2.4
VPS13AQ96RL7 Y_RNA.447-201ENST00000384184 113 ntBASIC0.05□□□□□ -2.4
VPS13AQ96RL7 VN1R36P-201ENST00000414936 291 ntBASIC0.05□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms