Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SMIM11P1-201ENST00000369586 178 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 RNU6-817P-201ENST00000391083 104 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
SHMT2P34897 MTCYBP36-201ENST00000404146 440 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 BTF3P7-201ENST00000407097 488 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.21□□□□□ -2.06
SHMT2P34897 RNU2-62P-201ENST00000410868 191 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.21□□□□□ -2.06
SHMT2P34897 AC005005.2-201ENST00000420779 380 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC2.21□□□□□ -2.06
SHMT2P34897 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.21□□□□□ -2.06
SHMT2P34897 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC2.21□□□□□ -2.06
SHMT2P34897 HMGB1P27-201ENST00000431429 603 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 AC098831.1-201ENST00000440661 216 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC2.21□□□□□ -2.06
SHMT2P34897 IPO7P1-201ENST00000442031 636 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 NEFMP1-201ENST00000443423 1006 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.21□□□□□ -2.06
SHMT2P34897 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.21□□□□□ -2.06
SHMT2P34897 SSXP1-201ENST00000453640 473 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 RNU7-125P-201ENST00000458760 62 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 SNORD97-201ENST00000459187 142 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 RPL37P6-201ENST00000460682 294 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 RPL30P6-201ENST00000475925 342 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 RPL23AP70-201ENST00000483361 460 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 RPS15AP34-201ENST00000487776 387 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 RPL23AP49-201ENST00000492925 468 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.21□□□□□ -2.06
SHMT2P34897 AF131216.2-201ENST00000512316 564 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 MRPS33P3-201ENST00000513456 322 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.21□□□□□ -2.06
SHMT2P34897 SCARNA17.1-201ENST00000516211 143 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 SCARNA17.2-201ENST00000516334 143 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.21□□□□□ -2.06
SHMT2P34897 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC2.21□□□□□ -2.06
SHMT2P34897 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.21□□□□□ -2.06
SHMT2P34897 AL670379.6-201ENST00000603753 252 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 AL670379.11-201ENST00000604059 253 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 AC008162.1-201ENST00000604718 254 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 AL670379.1-201ENST00000604752 252 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 AL670379.5-201ENST00000605253 252 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 AL670379.12-201ENST00000605291 253 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 AL670379.8-201ENST00000605353 252 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 AC121334.2-201ENST00000605387 271 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 AL670379.7-201ENST00000605823 252 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 AL360219.1-201ENST00000610230 366 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 MIR6895-201ENST00000613497 78 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 SCARNA17.4-201ENST00000614296 143 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.21□□□□□ -2.06
SHMT2P34897 AC006338.1-201ENST00000618453 749 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 AC079248.2-201ENST00000623779 326 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 AC079416.3-201ENST00000624479 549 ntBASIC2.21□□□□□ -2.06
SHMT2P34897 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
SHMT2P34897 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.21□□□□□ -2.06
SHMT2P34897 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.21□□□□□ -2.06
SHMT2P34897 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.2□□□□□ -2.06
SHMT2P34897 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.2□□□□□ -2.06
SHMT2P34897 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.2□□□□□ -2.06
SHMT2P34897 AL139276.1-201ENST00000311910 1001 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 RNU4-1-201ENST00000363925 141 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 RNU6-461P-201ENST00000364195 107 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 OR5H15-201ENST00000383696 930 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 RNU6-750P-201ENST00000390946 107 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 Y_RNA.608-201ENST00000410647 95 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.2□□□□□ -2.06
SHMT2P34897 MTND1P23-201ENST00000416931 372 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 USP9YP27-201ENST00000418455 438 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 SEPT2P1-201ENST00000419651 180 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 AC093106.2-201ENST00000428212 385 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
SHMT2P34897 HMGB3P12-201ENST00000438745 556 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 AL031659.1-201ENST00000447075 539 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 AL590365.1-201ENST00000450788 243 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.2□□□□□ -2.06
SHMT2P34897 AP000797.1-201ENST00000478870 387 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.2□□□□□ -2.06
SHMT2P34897 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.2□□□□□ -2.06
SHMT2P34897 RPS3AP22-201ENST00000488297 769 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 Y_RNA.717-201ENST00000517106 92 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.2□□□□□ -2.06
SHMT2P34897 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.2□□□□□ -2.06
SHMT2P34897 VBP1-203ENST00000535916 944 ntTSL 2 BASIC2.2□□□□□ -2.06
SHMT2P34897 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.2□□□□□ -2.06
SHMT2P34897 LRRC34P1-201ENST00000542742 915 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC2.2□□□□□ -2.06
SHMT2P34897 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.2□□□□□ -2.06
SHMT2P34897 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.2□□□□□ -2.06
SHMT2P34897 Z99289.3-201ENST00000605586 594 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 AC138749.5-201ENST00000611461 208 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 AL589743.7-201ENST00000612637 233 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 AC116165.2-201ENST00000616705 206 ntBASIC2.2□□□□□ -2.06
SHMT2P34897 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.2□□□□□ -2.06
SHMT2P34897 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
SHMT2P34897 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
SHMT2P34897 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.19□□□□□ -2.06
SHMT2P34897 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.19□□□□□ -2.06
SHMT2P34897 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
SHMT2P34897 AL137003.2-201ENST00000606924 2538 ntBASIC2.19□□□□□ -2.06
SHMT2P34897 CKAP2P1-201ENST00000555477 2049 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms