Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 Y_RNA.275-201ENST00000364726 110 ntBASIC4.9□□□□□ -1.63
USP3Q9Y6I4 RNA5SP235-201ENST00000365411 114 ntBASIC4.9□□□□□ -1.63
USP3Q9Y6I4 UBBP2-201ENST00000376781 231 ntBASIC4.9□□□□□ -1.63
USP3Q9Y6I4 RFX3-203ENST00000381984 364 ntTSL 3 BASIC4.9□□□□□ -1.63
USP3Q9Y6I4 RNU6-72P-201ENST00000384285 79 ntBASIC4.9□□□□□ -1.63
USP3Q9Y6I4 RNU6-21P-201ENST00000384710 107 ntBASIC4.9□□□□□ -1.63
USP3Q9Y6I4 Y_RNA.569-201ENST00000384749 103 ntBASIC4.9□□□□□ -1.63
USP3Q9Y6I4 RNU2-68P-201ENST00000410878 191 ntBASIC4.9□□□□□ -1.63
USP3Q9Y6I4 AC245028.1-201ENST00000423259 256 ntBASIC4.9□□□□□ -1.63
USP3Q9Y6I4 AC079780.1-201ENST00000428259 207 ntBASIC4.9□□□□□ -1.63
USP3Q9Y6I4 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.9□□□□□ -1.63
USP3Q9Y6I4 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC4.9□□□□□ -1.63
USP3Q9Y6I4 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.9□□□□□ -1.63
USP3Q9Y6I4 RPL21P104-201ENST00000464143 478 ntBASIC4.9□□□□□ -1.63
USP3Q9Y6I4 RNU6-1114P-201ENST00000516022 107 ntBASIC4.9□□□□□ -1.63
USP3Q9Y6I4 RNU7-200P-201ENST00000516105 62 ntBASIC4.9□□□□□ -1.63
USP3Q9Y6I4 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.9□□□□□ -1.63
USP3Q9Y6I4 AC016256.1-201ENST00000547971 354 ntBASIC4.9□□□□□ -1.63
USP3Q9Y6I4 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.9□□□□□ -1.63
USP3Q9Y6I4 MIR4330-201ENST00000579077 105 ntBASIC4.9□□□□□ -1.63
USP3Q9Y6I4 MIR4423-201ENST00000580922 80 ntBASIC4.9□□□□□ -1.63
USP3Q9Y6I4 MIR4472-2-201ENST00000582069 67 ntBASIC4.9□□□□□ -1.63
USP3Q9Y6I4 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.9□□□□□ -1.63
USP3Q9Y6I4 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC4.9□□□□□ -1.63
USP3Q9Y6I4 AC021753.1-201ENST00000635724 168 ntBASIC4.9□□□□□ -1.63
USP3Q9Y6I4 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.9□□□□□ -1.63
USP3Q9Y6I4 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
USP3Q9Y6I4 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
USP3Q9Y6I4 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.9□□□□□ -1.63
USP3Q9Y6I4 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
USP3Q9Y6I4 AL353743.1-202ENST00000431724 1695 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.89□□□□□ -1.63
USP3Q9Y6I4 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
USP3Q9Y6I4 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
USP3Q9Y6I4 UBE2WP1-201ENST00000362030 340 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 RNU6-858P-201ENST00000362436 107 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 RNU6-740P-201ENST00000364734 105 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 RNU6-1286P-201ENST00000383871 107 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 RNU6-1035P-201ENST00000384477 107 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 SNORA68.2-201ENST00000391263 128 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 RPS4XP3-201ENST00000398541 413 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 EIF4EBP2P3-201ENST00000403144 334 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 AL353705.4-201ENST00000449661 238 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.89□□□□□ -1.63
USP3Q9Y6I4 RPL23AP65-201ENST00000475608 468 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 RPL23AP75-201ENST00000491601 451 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 AL132838.2-201ENST00000492041 314 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 Y_RNA.679-201ENST00000516416 91 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 RN7SKP272-201ENST00000516988 232 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.89□□□□□ -1.63
USP3Q9Y6I4 AC027288.2-201ENST00000553028 243 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 MIR3936-201ENST00000584304 110 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 AP000346.3-201ENST00000622821 210 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 U3.53-201ENST00000628922 216 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 HAUS6P2-201ENST00000433254 2404 ntBASIC4.89□□□□□ -1.63
USP3Q9Y6I4 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
USP3Q9Y6I4 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
USP3Q9Y6I4 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.89□□□□□ -1.63
USP3Q9Y6I4 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
USP3Q9Y6I4 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
USP3Q9Y6I4 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 ZNF137P-201ENST00000456718 1920 ntBASIC4.88□□□□□ -1.63
USP3Q9Y6I4 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 RNU6-222P-201ENST00000362438 107 ntBASIC4.88□□□□□ -1.63
USP3Q9Y6I4 RNU6-137P-201ENST00000363680 108 ntBASIC4.88□□□□□ -1.63
USP3Q9Y6I4 RNU6-879P-201ENST00000364328 108 ntBASIC4.88□□□□□ -1.63
USP3Q9Y6I4 Y_RNA.233-201ENST00000364407 101 ntBASIC4.88□□□□□ -1.63
USP3Q9Y6I4 RNU6-81P-201ENST00000365608 104 ntBASIC4.88□□□□□ -1.63
USP3Q9Y6I4 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 Y_RNA.435-201ENST00000384095 112 ntBASIC4.88□□□□□ -1.63
USP3Q9Y6I4 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 SNORA46.1-201ENST00000391069 153 ntBASIC4.88□□□□□ -1.63
USP3Q9Y6I4 MIR1271-201ENST00000408537 86 ntBASIC4.88□□□□□ -1.63
USP3Q9Y6I4 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 SCARNA10-201ENST00000459255 330 ntBASIC4.88□□□□□ -1.63
USP3Q9Y6I4 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 AL591473.1-201ENST00000464297 313 ntBASIC4.88□□□□□ -1.63
USP3Q9Y6I4 RN7SL354P-201ENST00000469282 294 ntBASIC4.88□□□□□ -1.63
USP3Q9Y6I4 AC023424.1-201ENST00000496058 459 ntBASIC4.88□□□□□ -1.63
USP3Q9Y6I4 AC074198.2-201ENST00000508153 258 ntBASIC4.88□□□□□ -1.63
USP3Q9Y6I4 SNORA31.20-201ENST00000517111 133 ntBASIC4.88□□□□□ -1.63
USP3Q9Y6I4 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 AC010928.2-201ENST00000588017 287 ntBASIC4.88□□□□□ -1.63
USP3Q9Y6I4 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms