Protein–RNA interactions for Protein: Q53GD3

SLC44A4, Choline transporter-like protein 4, humanhuman

Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A4Q53GD3 AC093913.1-201ENST00000614178 329 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 AL355365.1-201ENST00000616480 294 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 ZNF826P-207ENST00000622273 1910 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 AC103710.2-202ENST00000641454 2853 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 SNORD9-201ENST00000362566 104 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 RNU6-817P-201ENST00000391083 104 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 RNU6-510P-201ENST00000391239 108 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 U3.42-201ENST00000408746 214 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 RNA5SP111-201ENST00000411386 101 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 RPS12P24-201ENST00000412619 387 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 MTND3P8-201ENST00000412909 339 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 OR6C66P-201ENST00000414917 930 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 Z85995.1-201ENST00000415547 335 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 NDUFB4P7-201ENST00000423198 363 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 AC007919.1-201ENST00000429380 217 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 HMGB1P27-201ENST00000431429 603 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 SNORA71B-202ENST00000439232 272 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 MTCYBP6-201ENST00000441810 138 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 MTND4P19-201ENST00000446659 478 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 RNU7-180P-201ENST00000459240 63 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 RPL38P4-201ENST00000502376 214 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 RNU6-1038P-201ENST00000516516 104 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 RNU6-685P-201ENST00000517088 95 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 RNU6-1314P-201ENST00000517139 104 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 AC087241.2-201ENST00000535801 324 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 AC021646.1-201ENST00000605469 484 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 SCARNA15.3-201ENST00000626315 122 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 SCARNA4.1-201ENST00000628597 123 ntBASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SLC44A4Q53GD3 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 UBE2L2-201ENST00000254302 429 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 RNU6-50P-201ENST00000362356 103 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 RNU6-512P-201ENST00000364438 103 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 MIR184-201ENST00000384962 84 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 RNU6-193P-201ENST00000410977 107 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 AC096664.2-201ENST00000411843 406 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 RPS15AP6-201ENST00000420703 385 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 SNRPFP3-201ENST00000457792 225 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 RPL21P8-201ENST00000465083 535 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 RNA5SP208-201ENST00000516156 78 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 AC093331.1-201ENST00000521474 169 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 AP005597.4-201ENST00000526762 229 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 AC026464.5-201ENST00000562497 722 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 AC005668.1-201ENST00000571142 476 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 MIR4742-201ENST00000581069 85 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 MIR4298-201ENST00000584380 73 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 U6.98-201ENST00000637157 84 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 TPTE2P4-201ENST00000258589 1605 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 AC007823.1-201ENST00000569932 1566 ntBASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.79□□□□□ -1.8
SLC44A4Q53GD3 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SLC44A4Q53GD3 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.78□□□□□ -1.8
SLC44A4Q53GD3 RNU4-66P-201ENST00000365199 138 ntBASIC3.78□□□□□ -1.8
SLC44A4Q53GD3 RNU6-38P-201ENST00000384085 107 ntBASIC3.78□□□□□ -1.8
SLC44A4Q53GD3 Y_RNA.474-201ENST00000384341 102 ntBASIC3.78□□□□□ -1.8
SLC44A4Q53GD3 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.78□□□□□ -1.8
SLC44A4Q53GD3 RNU6-387P-201ENST00000411331 105 ntBASIC3.78□□□□□ -1.8
SLC44A4Q53GD3 AC009161.1-201ENST00000417306 376 ntBASIC3.78□□□□□ -1.8
SLC44A4Q53GD3 AL645937.1-202ENST00000421799 937 ntBASIC3.78□□□□□ -1.8
SLC44A4Q53GD3 CALM2P2-201ENST00000428512 440 ntBASIC3.78□□□□□ -1.8
SLC44A4Q53GD3 HMGB1P18-201ENST00000438801 619 ntBASIC3.78□□□□□ -1.8
SLC44A4Q53GD3 AC115115.1-201ENST00000449927 248 ntBASIC3.78□□□□□ -1.8
SLC44A4Q53GD3 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.78□□□□□ -1.8
SLC44A4Q53GD3 RNU6-333P-201ENST00000459117 107 ntBASIC3.78□□□□□ -1.8
SLC44A4Q53GD3 RNU6-953P-201ENST00000459154 107 ntBASIC3.78□□□□□ -1.8
SLC44A4Q53GD3 Y_RNA.632-201ENST00000459189 102 ntBASIC3.78□□□□□ -1.8
SLC44A4Q53GD3 HMGN2P26-201ENST00000463169 339 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 141.6 ms