Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.2□□□□□ -1.9
USP41Q3LFD5 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
USP41Q3LFD5 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
USP41Q3LFD5 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.2□□□□□ -1.9
USP41Q3LFD5 RNU6-517P-201ENST00000384362 110 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 MIR454-201ENST00000390180 115 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 RPS12P24-201ENST00000412619 387 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.2□□□□□ -1.9
USP41Q3LFD5 AL591212.2-201ENST00000433923 257 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC3.2□□□□□ -1.9
USP41Q3LFD5 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC3.2□□□□□ -1.9
USP41Q3LFD5 RPL23AP20-201ENST00000447965 421 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 RPS29P15-201ENST00000458329 171 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 AL135752.1-201ENST00000479477 471 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 AC009646.1-201ENST00000510455 318 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 SCGB1D5P-201ENST00000515134 247 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 RNU6-123P-201ENST00000516163 102 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 SNORD27.1-201ENST00000516319 72 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 RNA5SP290-201ENST00000517133 127 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.2□□□□□ -1.9
USP41Q3LFD5 AC107016.2-201ENST00000547968 190 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC3.2□□□□□ -1.9
USP41Q3LFD5 ELOCP29-201ENST00000588193 334 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 AC098826.3-201ENST00000603823 466 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 AC092954.2-201ENST00000609103 430 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 AC017083.3-201ENST00000609955 700 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 U6.114-201ENST00000636407 96 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 MTND5P42-201ENST00000637720 498 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
USP41Q3LFD5 AL035425.3-201ENST00000564206 4996 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
USP41Q3LFD5 AC009487.2-201ENST00000420969 6821 ntBASIC3.2□□□□□ -1.9
USP41Q3LFD5 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
USP41Q3LFD5 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
USP41Q3LFD5 OR4G2P-201ENST00000328113 903 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 RNU6-1085P-201ENST00000363576 107 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 Y_RNA.245-201ENST00000364493 95 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 SNORA51.4-201ENST00000364993 124 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 RNU6-61P-201ENST00000365528 109 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 RNU4-48P-201ENST00000365559 182 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 SNORA1.3-201ENST00000384676 136 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 UBE2V1P2-201ENST00000397758 440 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 RNU6-1077P-201ENST00000410506 102 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC3.19□□□□□ -1.9
USP41Q3LFD5 UBE2V1P10-201ENST00000414685 269 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 AC093151.1-201ENST00000427711 313 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.19□□□□□ -1.9
USP41Q3LFD5 MTND1P4-201ENST00000435196 415 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 Z82210.1-201ENST00000440037 231 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 AC093392.2-201ENST00000450682 337 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 AC027673.1-201ENST00000456245 405 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 RPL30P14-201ENST00000482744 348 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 MTND4LP22-201ENST00000508209 276 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 AC006445.2-201ENST00000510061 472 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 RNA5SP367-201ENST00000516557 118 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.19□□□□□ -1.9
USP41Q3LFD5 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.19□□□□□ -1.9
USP41Q3LFD5 TPRKBP2-201ENST00000565969 475 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 HMGB1P6-201ENST00000569046 646 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 AC006023.1-201ENST00000603944 259 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 AL161798.1-201ENST00000604630 131 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 AC022893.3-201ENST00000607665 437 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 AP001596.2-201ENST00000608410 312 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 MIR6076-201ENST00000617521 113 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 AC026585.1-201ENST00000619582 524 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 API5P2-201ENST00000397055 1498 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.19□□□□□ -1.9
USP41Q3LFD5 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
USP41Q3LFD5 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.19□□□□□ -1.9
USP41Q3LFD5 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
USP41Q3LFD5 AL049641.1-201ENST00000441055 1948 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 TPTE2P4-201ENST00000258589 1605 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 MTND5P17-201ENST00000418405 1603 ntBASIC3.19□□□□□ -1.9
USP41Q3LFD5 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
USP41Q3LFD5 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP41Q3LFD5 AC073325.2-201ENST00000339545 159 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 RNU6-780P-201ENST00000391030 104 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 RPS4XP8-201ENST00000402039 771 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 AL591416.1-201ENST00000404015 867 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 AL590002.1-201ENST00000406554 418 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 FCF1P9-201ENST00000412546 282 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
USP41Q3LFD5 RPL32P35-201ENST00000415214 394 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 OR51A5P-201ENST00000415429 942 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC3.18□□□□□ -1.9
USP41Q3LFD5 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC3.18□□□□□ -1.9
USP41Q3LFD5 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.18□□□□□ -1.9
USP41Q3LFD5 MTND3P21-201ENST00000433774 331 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 RPS12P18-201ENST00000442381 270 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 AL135938.1-201ENST00000443141 297 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.18□□□□□ -1.9
USP41Q3LFD5 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.18□□□□□ -1.9
USP41Q3LFD5 RNU7-182P-201ENST00000459009 62 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC3.18□□□□□ -1.9
USP41Q3LFD5 RBBP4P6-201ENST00000508098 202 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 AC091826.1-201ENST00000514065 313 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 RNA5SP217-201ENST00000515959 91 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 AP003034.1-201ENST00000534621 422 ntBASIC3.18□□□□□ -1.9
USP41Q3LFD5 ADI1P3-201ENST00000549509 470 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms