Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RPS3AP22-201ENST00000488297 769 ntBASIC3.09□□□□□ -1.91
BDNFP23560 RN7SL633P-201ENST00000488974 297 ntBASIC3.09□□□□□ -1.91
BDNFP23560 MRPS33P3-201ENST00000513456 322 ntBASIC3.09□□□□□ -1.91
BDNFP23560 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC3.09□□□□□ -1.91
BDNFP23560 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
BDNFP23560 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
BDNFP23560 RPL21P5-201ENST00000554662 472 ntBASIC3.09□□□□□ -1.91
BDNFP23560 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC3.09□□□□□ -1.91
BDNFP23560 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.09□□□□□ -1.91
BDNFP23560 MIR4658-201ENST00000584344 65 ntBASIC3.09□□□□□ -1.91
BDNFP23560 AC005332.10-201ENST00000612725 619 ntBASIC3.09□□□□□ -1.91
BDNFP23560 AC024940.5-201ENST00000622889 474 ntBASIC3.09□□□□□ -1.91
BDNFP23560 MIR203B-201ENST00000636080 86 ntBASIC3.09□□□□□ -1.91
BDNFP23560 AC093831.2-201ENST00000624393 3427 ntBASIC3.09□□□□□ -1.91
BDNFP23560 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
BDNFP23560 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.09□□□□□ -1.92
BDNFP23560 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.08□□□□□ -1.92
BDNFP23560 AC009487.2-201ENST00000420969 6821 ntBASIC3.08□□□□□ -1.92
BDNFP23560 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
BDNFP23560 MIR412-201ENST00000362142 91 ntBASIC3.08□□□□□ -1.92
BDNFP23560 RNU6-7-201ENST00000364784 107 ntBASIC3.08□□□□□ -1.92
BDNFP23560 RNU6-8-201ENST00000365467 107 ntBASIC3.08□□□□□ -1.92
BDNFP23560 RNU6-898P-201ENST00000365627 104 ntBASIC3.08□□□□□ -1.92
BDNFP23560 RPL23AP32-201ENST00000395315 459 ntBASIC3.08□□□□□ -1.92
BDNFP23560 RNU2-39P-201ENST00000410604 198 ntBASIC3.08□□□□□ -1.92
BDNFP23560 AC097463.2-201ENST00000421074 142 ntBASIC3.08□□□□□ -1.92
BDNFP23560 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.08□□□□□ -1.92
BDNFP23560 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC3.08□□□□□ -1.92
BDNFP23560 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC3.08□□□□□ -1.92
BDNFP23560 AL135938.1-201ENST00000443141 297 ntBASIC3.08□□□□□ -1.92
BDNFP23560 RNU7-125P-201ENST00000458760 62 ntBASIC3.08□□□□□ -1.92
BDNFP23560 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC3.08□□□□□ -1.92
BDNFP23560 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC3.08□□□□□ -1.92
BDNFP23560 FABP5P5-201ENST00000515537 406 ntBASIC3.08□□□□□ -1.92
BDNFP23560 SCARNA13-201ENST00000516672 275 ntBASIC3.08□□□□□ -1.92
BDNFP23560 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.08□□□□□ -1.92
BDNFP23560 AP005902.1-201ENST00000521358 186 ntBASIC3.08□□□□□ -1.92
BDNFP23560 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC3.08□□□□□ -1.92
BDNFP23560 BNIP3P8-201ENST00000597863 560 ntBASIC3.08□□□□□ -1.92
BDNFP23560 AL670379.10-201ENST00000604330 253 ntBASIC3.08□□□□□ -1.92
BDNFP23560 AL022161.1-201ENST00000604390 213 ntBASIC3.08□□□□□ -1.92
BDNFP23560 AL670379.9-201ENST00000605428 253 ntBASIC3.08□□□□□ -1.92
BDNFP23560 MIR7106-201ENST00000612419 65 ntBASIC3.08□□□□□ -1.92
BDNFP23560 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.08□□□□□ -1.92
BDNFP23560 Z75746.1-201ENST00000440243 2080 ntBASIC3.08□□□□□ -1.92
BDNFP23560 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
BDNFP23560 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.07□□□□□ -1.92
BDNFP23560 AL035425.3-201ENST00000564206 4996 ntBASIC3.07□□□□□ -1.92
BDNFP23560 OR5J1P-201ENST00000313544 939 ntBASIC3.07□□□□□ -1.92
BDNFP23560 RNU6-553P-201ENST00000364047 96 ntBASIC3.07□□□□□ -1.92
BDNFP23560 SNORA67.1-201ENST00000364749 141 ntBASIC3.07□□□□□ -1.92
BDNFP23560 RNA5SP240-201ENST00000365355 128 ntBASIC3.07□□□□□ -1.92
BDNFP23560 SNORA9.2-201ENST00000365361 133 ntBASIC3.07□□□□□ -1.92
BDNFP23560 SNORA18.3-201ENST00000384122 132 ntBASIC3.07□□□□□ -1.92
BDNFP23560 RNU6-851P-201ENST00000384565 107 ntBASIC3.07□□□□□ -1.92
BDNFP23560 MIR34A-201ENST00000385130 110 ntBASIC3.07□□□□□ -1.92
BDNFP23560 MIR634-201ENST00000385208 97 ntBASIC3.07□□□□□ -1.92
BDNFP23560 UBE2V1P2-201ENST00000397758 440 ntBASIC3.07□□□□□ -1.92
BDNFP23560 RNU6-387P-201ENST00000411331 105 ntBASIC3.07□□□□□ -1.92
BDNFP23560 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.07□□□□□ -1.92
BDNFP23560 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC3.07□□□□□ -1.92
BDNFP23560 CYCSP48-201ENST00000417124 323 ntBASIC3.07□□□□□ -1.92
BDNFP23560 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.07□□□□□ -1.92
BDNFP23560 RPS20P5-201ENST00000434808 360 ntBASIC3.07□□□□□ -1.92
BDNFP23560 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.07□□□□□ -1.92
BDNFP23560 AL136380.1-201ENST00000447970 162 ntBASIC3.07□□□□□ -1.92
BDNFP23560 AC009961.3-201ENST00000449832 765 ntBASIC3.07□□□□□ -1.92
BDNFP23560 UQCRHP3-201ENST00000451503 251 ntBASIC3.07□□□□□ -1.92
BDNFP23560 AC006026.2-201ENST00000457376 180 ntBASIC3.07□□□□□ -1.92
BDNFP23560 AC117503.1-201ENST00000472241 394 ntBASIC3.07□□□□□ -1.92
BDNFP23560 CKS1BP2-201ENST00000497342 240 ntBASIC3.07□□□□□ -1.92
BDNFP23560 RNU5B-3P-201ENST00000516601 115 ntBASIC3.07□□□□□ -1.92
BDNFP23560 AP003181.2-201ENST00000528941 181 ntBASIC3.07□□□□□ -1.92
BDNFP23560 AC107016.2-201ENST00000547968 190 ntBASIC3.07□□□□□ -1.92
BDNFP23560 AL133241.1-201ENST00000556832 487 ntBASIC3.07□□□□□ -1.92
BDNFP23560 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.07□□□□□ -1.92
BDNFP23560 MIR4446-201ENST00000578505 67 ntBASIC3.07□□□□□ -1.92
BDNFP23560 AL022154.1-201ENST00000604698 785 ntBASIC3.07□□□□□ -1.92
BDNFP23560 AL359198.2-201ENST00000611836 194 ntBASIC3.07□□□□□ -1.92
BDNFP23560 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.07□□□□□ -1.92
BDNFP23560 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.07□□□□□ -1.92
BDNFP23560 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.07□□□□□ -1.92
BDNFP23560 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
BDNFP23560 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
BDNFP23560 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
BDNFP23560 OR56A5-201ENST00000340110 738 ntBASIC3.06□□□□□ -1.92
BDNFP23560 RNA5SP393-201ENST00000363423 117 ntBASIC3.06□□□□□ -1.92
BDNFP23560 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.06□□□□□ -1.92
BDNFP23560 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
BDNFP23560 Z98749.2-208ENST00000381646 500 ntBASIC3.06□□□□□ -1.92
BDNFP23560 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
BDNFP23560 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.06□□□□□ -1.92
BDNFP23560 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.06□□□□□ -1.92
BDNFP23560 RPL7P34-201ENST00000433316 712 ntBASIC3.06□□□□□ -1.92
BDNFP23560 RPL7P12-201ENST00000446719 750 ntBASIC3.06□□□□□ -1.92
BDNFP23560 RGS5-217ENST00000451759 835 ntTSL 3 BASIC3.06□□□□□ -1.92
BDNFP23560 CYP2C59P-201ENST00000457790 269 ntBASIC3.06□□□□□ -1.92
BDNFP23560 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
BDNFP23560 ANKRD36BP1-202ENST00000604892 1417 ntBASIC3.06□□□□□ -1.92
BDNFP23560 AL158032.1-201ENST00000605401 106 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms