Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL8A1P27658 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
COL8A1P27658 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC4.51□□□□□ -1.69
COL8A1P27658 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC4.51□□□□□ -1.69
COL8A1P27658 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL8A1P27658 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.51□□□□□ -1.69
COL8A1P27658 RNU6-281P-201ENST00000384212 103 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 MIR329-1-201ENST00000385028 80 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 SNORA26.2-201ENST00000390922 122 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 ENSAP1-201ENST00000392855 326 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 RNU6-1025P-201ENST00000410629 104 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 RNU6-1001P-201ENST00000411265 100 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 AL391219.1-201ENST00000422570 483 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 AIMP1P2-201ENST00000425294 312 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 CRIP1P1-201ENST00000427567 185 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC4.51□□□□□ -1.69
COL8A1P27658 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.51□□□□□ -1.69
COL8A1P27658 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.51□□□□□ -1.69
COL8A1P27658 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.51□□□□□ -1.69
COL8A1P27658 SNORA84-201ENST00000459229 133 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC4.51□□□□□ -1.69
COL8A1P27658 RN7SL197P-201ENST00000466981 299 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 RN7SL319P-201ENST00000480656 221 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC4.51□□□□□ -1.69
COL8A1P27658 RNU6-927P-201ENST00000516199 100 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 Y_RNA.677-201ENST00000516401 85 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 AP003327.1-201ENST00000529684 127 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC4.51□□□□□ -1.69
COL8A1P27658 HMGB1P14-201ENST00000557424 591 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC4.51□□□□□ -1.69
COL8A1P27658 MIR3145-201ENST00000580727 82 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 AC024153.1-201ENST00000603103 365 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 AC069294.1-201ENST00000608397 350 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 AC107294.1-201ENST00000609524 467 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 AC073869.8-201ENST00000641806 335 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.51□□□□□ -1.69
COL8A1P27658 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC4.51□□□□□ -1.69
COL8A1P27658 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL8A1P27658 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
COL8A1P27658 AC009962.1-201ENST00000567327 3813 ntBASIC4.51□□□□□ -1.69
COL8A1P27658 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.51□□□□□ -1.69
COL8A1P27658 AC083843.2-201ENST00000568248 6253 ntBASIC4.5□□□□□ -1.69
COL8A1P27658 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL8A1P27658 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.5□□□□□ -1.69
COL8A1P27658 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC4.5□□□□□ -1.69
COL8A1P27658 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL8A1P27658 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
COL8A1P27658 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
COL8A1P27658 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL8A1P27658 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL8A1P27658 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
COL8A1P27658 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL8A1P27658 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC4.5□□□□□ -1.69
COL8A1P27658 RNU6-249P-201ENST00000363016 102 ntBASIC4.5□□□□□ -1.69
COL8A1P27658 RNU1-146P-201ENST00000364015 165 ntBASIC4.5□□□□□ -1.69
COL8A1P27658 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL8A1P27658 SNORA5.1-201ENST00000384275 131 ntBASIC4.5□□□□□ -1.69
COL8A1P27658 RNU6-541P-201ENST00000384709 110 ntBASIC4.5□□□□□ -1.69
COL8A1P27658 MIR10B-201ENST00000385011 110 ntBASIC4.5□□□□□ -1.69
COL8A1P27658 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL8A1P27658 SNORA11F-201ENST00000408237 128 ntBASIC4.5□□□□□ -1.69
COL8A1P27658 MIR1182-201ENST00000408363 97 ntBASIC4.5□□□□□ -1.69
COL8A1P27658 RNY4P29-201ENST00000410801 97 ntBASIC4.5□□□□□ -1.69
COL8A1P27658 AL732292.1-201ENST00000426692 226 ntBASIC4.5□□□□□ -1.69
COL8A1P27658 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.5□□□□□ -1.69
COL8A1P27658 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC4.5□□□□□ -1.69
COL8A1P27658 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC4.5□□□□□ -1.69
COL8A1P27658 Y_RNA.651-201ENST00000459380 103 ntBASIC4.5□□□□□ -1.69
COL8A1P27658 AC087588.1-201ENST00000462203 316 ntBASIC4.5□□□□□ -1.69
COL8A1P27658 RFPL4AP5-201ENST00000514977 504 ntBASIC4.5□□□□□ -1.69
COL8A1P27658 NACAP3-201ENST00000552100 481 ntBASIC4.5□□□□□ -1.69
COL8A1P27658 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC4.5□□□□□ -1.69
COL8A1P27658 MIR3646-201ENST00000578301 84 ntBASIC4.5□□□□□ -1.69
COL8A1P27658 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.5□□□□□ -1.69
COL8A1P27658 OR9K1P-202ENST00000641111 3217 ntBASIC4.5□□□□□ -1.69
COL8A1P27658 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.5□□□□□ -1.69
COL8A1P27658 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC4.5□□□□□ -1.69
COL8A1P27658 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.5□□□□□ -1.69
COL8A1P27658 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL8A1P27658 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC4.49□□□□□ -1.69
COL8A1P27658 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL8A1P27658 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.49□□□□□ -1.69
COL8A1P27658 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL8A1P27658 ABCC13-202ENST00000463099 3842 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 AK9-203ENST00000368948 2478 ntTSL 5 BASIC4.49□□□□□ -1.69
COL8A1P27658 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL8A1P27658 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC4.49□□□□□ -1.69
COL8A1P27658 RNU6-336P-201ENST00000364891 107 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 RNU6-1286P-201ENST00000383871 107 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.49□□□□□ -1.69
COL8A1P27658 MIR298-201ENST00000401212 88 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 AL035079.1-201ENST00000405210 287 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 RNU2-43P-201ENST00000410306 190 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.49□□□□□ -1.69
COL8A1P27658 AL158156.1-201ENST00000422509 473 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.49□□□□□ -1.69
COL8A1P27658 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC4.49□□□□□ -1.69
COL8A1P27658 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC4.49□□□□□ -1.69
COL8A1P27658 FHP1-201ENST00000442741 703 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 KNOP1P3-201ENST00000446933 426 ntBASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms