Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.52□□□□□ -1.53
COL9A1P20849 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL9A1P20849 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL9A1P20849 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL9A1P20849 AC093671.1-201ENST00000624981 2929 ntBASIC5.51□□□□□ -1.53
COL9A1P20849 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.51□□□□□ -1.53
COL9A1P20849 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC5.51□□□□□ -1.53
COL9A1P20849 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL9A1P20849 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.51□□□□□ -1.53
COL9A1P20849 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL9A1P20849 AC073073.2-201ENST00000609827 2578 ntBASIC5.51□□□□□ -1.53
COL9A1P20849 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC5.51□□□□□ -1.53
COL9A1P20849 AC092268.1-201ENST00000342691 405 ntBASIC5.51□□□□□ -1.53
COL9A1P20849 RNA5SP455-201ENST00000365190 119 ntBASIC5.51□□□□□ -1.53
COL9A1P20849 SNORD116-21-201ENST00000384507 92 ntBASIC5.51□□□□□ -1.53
COL9A1P20849 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC5.51□□□□□ -1.53
COL9A1P20849 CYCSP39-201ENST00000565821 309 ntBASIC5.51□□□□□ -1.53
COL9A1P20849 MIR3667-201ENST00000581025 74 ntBASIC5.51□□□□□ -1.53
COL9A1P20849 AL356218.2-201ENST00000605264 187 ntBASIC5.51□□□□□ -1.53
COL9A1P20849 AP001005.3-201ENST00000622049 129 ntBASIC5.51□□□□□ -1.53
COL9A1P20849 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL9A1P20849 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
COL9A1P20849 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL9A1P20849 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL9A1P20849 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.51□□□□□ -1.53
COL9A1P20849 AC144833.1-201ENST00000567953 4089 ntBASIC5.51□□□□□ -1.53
COL9A1P20849 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC5.51□□□□□ -1.53
COL9A1P20849 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC5.51□□□□□ -1.53
COL9A1P20849 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC5.51□□□□□ -1.53
COL9A1P20849 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
COL9A1P20849 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC5.5□□□□□ -1.53
COL9A1P20849 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL9A1P20849 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL9A1P20849 AC008555.8-201ENST00000623602 2168 ntBASIC5.5□□□□□ -1.53
COL9A1P20849 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL9A1P20849 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL9A1P20849 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC5.5□□□□□ -1.53
COL9A1P20849 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.5□□□□□ -1.53
COL9A1P20849 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.5□□□□□ -1.53
COL9A1P20849 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.5□□□□□ -1.53
COL9A1P20849 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL9A1P20849 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
COL9A1P20849 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
COL9A1P20849 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
COL9A1P20849 Y_RNA.111-201ENST00000363248 100 ntBASIC5.5□□□□□ -1.53
COL9A1P20849 Y_RNA.572-201ENST00000384757 98 ntBASIC5.5□□□□□ -1.53
COL9A1P20849 YPEL5P1-201ENST00000419731 367 ntBASIC5.5□□□□□ -1.53
COL9A1P20849 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC5.5□□□□□ -1.53
COL9A1P20849 Y_RNA.677-201ENST00000516401 85 ntBASIC5.5□□□□□ -1.53
COL9A1P20849 SCARNA16.4-201ENST00000516956 187 ntBASIC5.5□□□□□ -1.53
COL9A1P20849 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.5□□□□□ -1.53
COL9A1P20849 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC5.5□□□□□ -1.53
COL9A1P20849 AL356575.1-201ENST00000603008 283 ntBASIC5.5□□□□□ -1.53
COL9A1P20849 AC019159.1-201ENST00000605094 187 ntBASIC5.5□□□□□ -1.53
COL9A1P20849 ZYXP1-201ENST00000617638 118 ntBASIC5.5□□□□□ -1.53
COL9A1P20849 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.5□□□□□ -1.53
COL9A1P20849 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC5.5□□□□□ -1.53
COL9A1P20849 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC5.5□□□□□ -1.53
COL9A1P20849 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL9A1P20849 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.5□□□□□ -1.53
COL9A1P20849 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL9A1P20849 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL9A1P20849 OFD1P6Y-202ENST00000451061 2724 ntBASIC5.5□□□□□ -1.53
COL9A1P20849 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL9A1P20849 CENPCP1-201ENST00000533085 2578 ntBASIC5.5□□□□□ -1.53
COL9A1P20849 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC5.5□□□□□ -1.53
COL9A1P20849 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL9A1P20849 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL9A1P20849 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL9A1P20849 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL9A1P20849 RNU6-249P-201ENST00000363016 102 ntBASIC5.49□□□□□ -1.53
COL9A1P20849 RNU6-1285P-201ENST00000363480 105 ntBASIC5.49□□□□□ -1.53
COL9A1P20849 RNU1-140P-201ENST00000365040 165 ntBASIC5.49□□□□□ -1.53
COL9A1P20849 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL9A1P20849 RNY4P30-201ENST00000410216 95 ntBASIC5.49□□□□□ -1.53
COL9A1P20849 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.49□□□□□ -1.53
COL9A1P20849 AC007969.2-201ENST00000441891 191 ntBASIC5.49□□□□□ -1.53
COL9A1P20849 snoU13.6-201ENST00000458785 104 ntBASIC5.49□□□□□ -1.53
COL9A1P20849 AC007215.1-201ENST00000464893 276 ntBASIC5.49□□□□□ -1.53
COL9A1P20849 AC091179.3-201ENST00000474761 144 ntBASIC5.49□□□□□ -1.53
COL9A1P20849 KC877373.1-201ENST00000479066 408 ntBASIC5.49□□□□□ -1.53
COL9A1P20849 RPL23AP70-201ENST00000483361 460 ntBASIC5.49□□□□□ -1.53
COL9A1P20849 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC5.49□□□□□ -1.53
COL9A1P20849 AC026726.1-201ENST00000512859 601 ntBASIC5.49□□□□□ -1.53
COL9A1P20849 SNORD33.1-201ENST00000516213 88 ntBASIC5.49□□□□□ -1.53
COL9A1P20849 RNU6-537P-201ENST00000517277 103 ntBASIC5.49□□□□□ -1.53
COL9A1P20849 FTH1P11-201ENST00000517577 551 ntBASIC5.49□□□□□ -1.53
COL9A1P20849 AC090142.3-201ENST00000519012 385 ntBASIC5.49□□□□□ -1.53
COL9A1P20849 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC5.49□□□□□ -1.53
COL9A1P20849 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL9A1P20849 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL9A1P20849 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
COL9A1P20849 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL9A1P20849 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL9A1P20849 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC5.49□□□□□ -1.53
COL9A1P20849 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL9A1P20849 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL9A1P20849 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
COL9A1P20849 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL9A1P20849 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms