Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 DEFA11P-201ENST00000446470 261 ntBASIC9.07□□□□□ -0.96
SENP3Q9H4L4 RN7SL714P-201ENST00000487050 298 ntBASIC9.07□□□□□ -0.96
SENP3Q9H4L4 RNA5SP434-201ENST00000516647 121 ntBASIC9.07□□□□□ -0.96
SENP3Q9H4L4 AC004812.1-201ENST00000540773 146 ntBASIC9.07□□□□□ -0.96
SENP3Q9H4L4 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC9.07□□□□□ -0.96
SENP3Q9H4L4 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC9.07□□□□□ -0.96
SENP3Q9H4L4 GTF2IP4-201ENST00000453092 2054 ntBASIC9.07□□□□□ -0.96
SENP3Q9H4L4 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC9.07□□□□□ -0.96
SENP3Q9H4L4 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC9.07□□□□□ -0.96
SENP3Q9H4L4 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC9.07□□□□□ -0.96
SENP3Q9H4L4 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC9.07□□□□□ -0.96
SENP3Q9H4L4 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC9.07□□□□□ -0.96
SENP3Q9H4L4 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC9.06□□□□□ -0.96
SENP3Q9H4L4 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC9.06□□□□□ -0.96
SENP3Q9H4L4 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
SENP3Q9H4L4 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC9.06□□□□□ -0.96
SENP3Q9H4L4 SNORD30.1-201ENST00000391309 70 ntBASIC9.06□□□□□ -0.96
SENP3Q9H4L4 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC9.06□□□□□ -0.96
SENP3Q9H4L4 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC9.06□□□□□ -0.96
SENP3Q9H4L4 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC9.06□□□□□ -0.96
SENP3Q9H4L4 AC010401.1-201ENST00000463867 348 ntBASIC9.06□□□□□ -0.96
SENP3Q9H4L4 RPS27P22-201ENST00000478056 241 ntBASIC9.06□□□□□ -0.96
SENP3Q9H4L4 RNU6-448P-201ENST00000517052 107 ntBASIC9.06□□□□□ -0.96
SENP3Q9H4L4 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC9.06□□□□□ -0.96
SENP3Q9H4L4 AL139124.1-201ENST00000609123 421 ntBASIC9.06□□□□□ -0.96
SENP3Q9H4L4 AC034229.6-201ENST00000623704 224 ntBASIC9.06□□□□□ -0.96
SENP3Q9H4L4 KIF18A-201ENST00000263181 3568 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
SENP3Q9H4L4 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
SENP3Q9H4L4 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
SENP3Q9H4L4 HMG20A-202ENST00000381714 4112 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
SENP3Q9H4L4 ST18-201ENST00000276480 6187 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
SENP3Q9H4L4 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 WDR31-203ENST00000374195 3101 ntAPPRIS P3 TSL 5 BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 ZNF605-202ENST00000360187 9340 ntAPPRIS P3 TSL 1 (best) BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 AC079753.1-201ENST00000623243 3868 ntBASIC9.05□□□□□ -0.96
SENP3Q9H4L4 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 MIR9-2-201ENST00000384838 87 ntBASIC9.05□□□□□ -0.96
SENP3Q9H4L4 AC073850.1-201ENST00000449243 255 ntBASIC9.05□□□□□ -0.96
SENP3Q9H4L4 ENSA-211ENST00000503345 793 ntTSL 3 BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 KHDC1P1-201ENST00000511053 508 ntBASIC9.05□□□□□ -0.96
SENP3Q9H4L4 AL671862.1-201ENST00000515851 349 ntBASIC9.05□□□□□ -0.96
SENP3Q9H4L4 RNU6-1231P-201ENST00000517185 103 ntBASIC9.05□□□□□ -0.96
SENP3Q9H4L4 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 AC022404.1-201ENST00000555320 273 ntBASIC9.05□□□□□ -0.96
SENP3Q9H4L4 DLEU2_5.2-201ENST00000610606 84 ntBASIC9.05□□□□□ -0.96
SENP3Q9H4L4 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 TEKT1-201ENST00000338694 3421 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 ADH6-203ENST00000394899 2802 ntAPPRIS ALT1 TSL 2 BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
SENP3Q9H4L4 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC9.04□□□□□ -0.96
SENP3Q9H4L4 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
SENP3Q9H4L4 SFTPD-AS1-201ENST00000608229 5001 ntBASIC9.04□□□□□ -0.96
SENP3Q9H4L4 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC9.04□□□□□ -0.96
SENP3Q9H4L4 AC020656.2-201ENST00000613291 5309 ntBASIC9.04□□□□□ -0.96
SENP3Q9H4L4 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
SENP3Q9H4L4 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC9.04□□□□□ -0.96
SENP3Q9H4L4 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
SENP3Q9H4L4 RNU6-1313P-201ENST00000362622 102 ntBASIC9.04□□□□□ -0.96
SENP3Q9H4L4 RN7SKP160-201ENST00000363804 340 ntBASIC9.04□□□□□ -0.96
SENP3Q9H4L4 RNU6-884P-201ENST00000363889 107 ntBASIC9.04□□□□□ -0.96
SENP3Q9H4L4 RNU6-171P-201ENST00000384354 107 ntBASIC9.04□□□□□ -0.96
SENP3Q9H4L4 AP000567.1-201ENST00000406413 156 ntBASIC9.04□□□□□ -0.96
SENP3Q9H4L4 RNU6-221P-201ENST00000459541 99 ntBASIC9.04□□□□□ -0.96
SENP3Q9H4L4 SUMO2P15-201ENST00000604285 278 ntBASIC9.04□□□□□ -0.96
SENP3Q9H4L4 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
SENP3Q9H4L4 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
SENP3Q9H4L4 AL355834.1-201ENST00000556602 3965 ntBASIC9.04□□□□□ -0.96
SENP3Q9H4L4 AC022164.1-201ENST00000568767 2673 ntBASIC9.04□□□□□ -0.96
SENP3Q9H4L4 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC9.04□□□□□ -0.96
SENP3Q9H4L4 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
SENP3Q9H4L4 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC9.04□□□□□ -0.96
SENP3Q9H4L4 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC9.03□□□□□ -0.96
SENP3Q9H4L4 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
SENP3Q9H4L4 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC9.03□□□□□ -0.96
SENP3Q9H4L4 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC9.03□□□□□ -0.96
SENP3Q9H4L4 Y_RNA.40-201ENST00000362645 93 ntBASIC9.03□□□□□ -0.96
SENP3Q9H4L4 RNA5SP235-201ENST00000365411 114 ntBASIC9.03□□□□□ -0.96
SENP3Q9H4L4 AC090844.1-201ENST00000422019 156 ntBASIC9.03□□□□□ -0.96
SENP3Q9H4L4 RN7SL561P-201ENST00000488553 281 ntBASIC9.03□□□□□ -0.96
SENP3Q9H4L4 RN7SL193P-201ENST00000491708 276 ntBASIC9.03□□□□□ -0.96
SENP3Q9H4L4 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC9.03□□□□□ -0.96
SENP3Q9H4L4 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC9.03□□□□□ -0.96
SENP3Q9H4L4 Mico1.1-201ENST00000611698 204 ntBASIC9.03□□□□□ -0.96
SENP3Q9H4L4 AC006435.5-201ENST00000624486 112 ntBASIC9.03□□□□□ -0.96
SENP3Q9H4L4 U6.111-201ENST00000636093 83 ntBASIC9.03□□□□□ -0.96
SENP3Q9H4L4 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
SENP3Q9H4L4 AL596244.1-201ENST00000567068 3779 ntBASIC9.03□□□□□ -0.96
SENP3Q9H4L4 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC9.03□□□□□ -0.96
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms