Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC2.37□□□□□ -2.03
COL4A4P53420 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.37□□□□□ -2.03
COL4A4P53420 BX322784.1-201ENST00000455793 1077 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.37□□□□□ -2.03
COL4A4P53420 AC013828.1-201ENST00000481845 158 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.37□□□□□ -2.03
COL4A4P53420 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC2.37□□□□□ -2.03
COL4A4P53420 FAM92A1P1-201ENST00000528023 890 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 OR5AL2P-201ENST00000532185 920 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AC137800.2-201ENST00000574375 120 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC2.37□□□□□ -2.03
COL4A4P53420 AC023158.2-201ENST00000614876 543 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.37□□□□□ -2.03
COL4A4P53420 FER-210ENST00000628534 558 ntTSL 5 BASIC2.37□□□□□ -2.03
COL4A4P53420 AC011460.1-201ENST00000636268 1834 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
COL4A4P53420 MTCO1P6-201ENST00000481192 1384 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.36□□□□□ -2.03
COL4A4P53420 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
COL4A4P53420 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.36□□□□□ -2.03
COL4A4P53420 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
COL4A4P53420 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.36□□□□□ -2.03
COL4A4P53420 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
COL4A4P53420 RNU6-1066P-201ENST00000363573 105 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 Y_RNA.295-201ENST00000364918 102 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 Y_RNA.529-201ENST00000384586 119 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
COL4A4P53420 RNU6-876P-201ENST00000391295 104 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 U3.37-201ENST00000408528 213 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 FCF1P2-201ENST00000415284 583 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 RPL21P111-201ENST00000418453 477 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.36□□□□□ -2.03
COL4A4P53420 PIGFP2-201ENST00000421400 651 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC2.36□□□□□ -2.03
COL4A4P53420 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC2.36□□□□□ -2.03
COL4A4P53420 AC244505.5-201ENST00000443639 207 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 AC007677.1-201ENST00000445757 515 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 MTCO1P42-201ENST00000457379 726 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 SNORD13-201ENST00000459299 104 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 snoU109.1-201ENST00000459339 135 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 AC008571.1-201ENST00000467232 300 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 RPS29P25-201ENST00000481709 171 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.36□□□□□ -2.03
COL4A4P53420 RNU6-416P-201ENST00000516265 103 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 AC239860.2-201ENST00000525886 270 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC2.36□□□□□ -2.03
COL4A4P53420 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.36□□□□□ -2.03
COL4A4P53420 AC125611.2-201ENST00000551907 647 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 AL391840.1-201ENST00000571144 367 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.36□□□□□ -2.03
COL4A4P53420 MIR548AB-201ENST00000584917 84 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.36□□□□□ -2.03
COL4A4P53420 AC131902.3-201ENST00000611767 581 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 Y_RNA.804-201ENST00000615262 101 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 FRG1KP-201ENST00000623592 341 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 AC009033.1-201ENST00000624279 431 ntBASIC2.36□□□□□ -2.03
COL4A4P53420 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.36□□□□□ -2.03
COL4A4P53420 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.36□□□□□ -2.03
COL4A4P53420 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
COL4A4P53420 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.36□□□□□ -2.03
COL4A4P53420 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
COL4A4P53420 RNU6-660P-201ENST00000364566 109 ntBASIC2.35□□□□□ -2.03
COL4A4P53420 SNORA62.2-201ENST00000364672 152 ntBASIC2.35□□□□□ -2.03
COL4A4P53420 SNORD6-201ENST00000365444 73 ntBASIC2.35□□□□□ -2.03
COL4A4P53420 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.35□□□□□ -2.03
COL4A4P53420 RNU6-1227P-201ENST00000383981 107 ntBASIC2.35□□□□□ -2.03
COL4A4P53420 RNU6-178P-201ENST00000384631 104 ntBASIC2.35□□□□□ -2.03
COL4A4P53420 SNORD65.1-201ENST00000390889 71 ntBASIC2.35□□□□□ -2.03
COL4A4P53420 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
COL4A4P53420 ZNF90P2-204ENST00000419323 1075 ntBASIC2.35□□□□□ -2.03
COL4A4P53420 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
COL4A4P53420 MTCO1P20-201ENST00000425366 358 ntBASIC2.35□□□□□ -2.03
COL4A4P53420 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC2.35□□□□□ -2.03
COL4A4P53420 RPS15AP28-201ENST00000435088 386 ntBASIC2.35□□□□□ -2.03
COL4A4P53420 MTND4P19-201ENST00000446659 478 ntBASIC2.35□□□□□ -2.03
COL4A4P53420 AC087385.1-201ENST00000475062 312 ntBASIC2.35□□□□□ -2.03
COL4A4P53420 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.35□□□□□ -2.03
COL4A4P53420 MIR449C-201ENST00000516047 92 ntBASIC2.35□□□□□ -2.03
COL4A4P53420 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.35□□□□□ -2.03
COL4A4P53420 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC2.35□□□□□ -2.03
COL4A4P53420 AP002453.2-201ENST00000533503 320 ntBASIC2.35□□□□□ -2.03
COL4A4P53420 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC2.35□□□□□ -2.03
COL4A4P53420 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC2.35□□□□□ -2.03
COL4A4P53420 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC2.35□□□□□ -2.03
COL4A4P53420 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.35□□□□□ -2.03
COL4A4P53420 AL022099.1-201ENST00000604551 712 ntBASIC2.35□□□□□ -2.03
COL4A4P53420 AL009028.1-201ENST00000604895 802 ntBASIC2.35□□□□□ -2.03
COL4A4P53420 AC120349.2-201ENST00000625002 298 ntBASIC2.35□□□□□ -2.03
COL4A4P53420 MIR1321-201ENST00000637766 79 ntBASIC2.35□□□□□ -2.03
COL4A4P53420 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
COL4A4P53420 AC006378.2-201ENST00000623178 2476 ntBASIC2.35□□□□□ -2.03
COL4A4P53420 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC2.35□□□□□ -2.03
COL4A4P53420 AL133412.1-201ENST00000380194 2992 ntBASIC2.35□□□□□ -2.03
COL4A4P53420 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
COL4A4P53420 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
COL4A4P53420 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
COL4A4P53420 RNU4-79P-201ENST00000362764 141 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 Y_RNA.263-201ENST00000364659 114 ntBASIC2.34□□□□□ -2.03
COL4A4P53420 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC2.34□□□□□ -2.03
COL4A4P53420 RNU6-723P-201ENST00000383973 107 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms