Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 MIR3160-1-201ENST00000577972 85 ntBASIC3.61□□□□□ -1.83
HOXA3O43365 AP000787.2-201ENST00000604432 568 ntBASIC3.61□□□□□ -1.83
HOXA3O43365 AC138627.2-201ENST00000624202 601 ntBASIC3.61□□□□□ -1.83
HOXA3O43365 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA3O43365 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA3O43365 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA3O43365 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
HOXA3O43365 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC3.61□□□□□ -1.83
HOXA3O43365 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXA3O43365 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC3.6□□□□□ -1.83
HOXA3O43365 AC008568.2-201ENST00000623862 2313 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA3O43365 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXA3O43365 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXA3O43365 RNY1P16-201ENST00000363063 111 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 U8.8-201ENST00000365399 135 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 RNU6-827P-201ENST00000365553 106 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 RHOT1P2-201ENST00000366423 333 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 RNU6-741P-201ENST00000383889 107 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 RPL23AP26-201ENST00000412728 464 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXA3O43365 RPL21P66-201ENST00000426566 466 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 AL590383.1-201ENST00000428602 75 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 AC133134.1-201ENST00000466800 359 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 RPL23AP45-201ENST00000476406 468 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 HMGN2P13-201ENST00000476476 274 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 AC105137.1-201ENST00000484355 562 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 AC069499.1-201ENST00000489433 509 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 AC020890.1-201ENST00000491837 504 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 AC078817.1-201ENST00000492623 435 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 AC110794.1-201ENST00000505816 425 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
HOXA3O43365 PARP4P3-201ENST00000510265 317 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 RNA5SP165-201ENST00000517142 115 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 CYCSP29-201ENST00000533731 318 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA3O43365 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA3O43365 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.6□□□□□ -1.83
HOXA3O43365 HMGB1P14-201ENST00000557424 591 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXA3O43365 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXA3O43365 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA3O43365 AL445567.2-201ENST00000618935 498 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXA3O43365 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA3O43365 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA3O43365 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA3O43365 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXA3O43365 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA3O43365 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXA3O43365 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXA3O43365 AC066616.2-201ENST00000559334 1481 ntBASIC3.6□□□□□ -1.83
HOXA3O43365 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXA3O43365 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXA3O43365 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXA3O43365 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC3.59□□□□□ -1.83
HOXA3O43365 RNU6-702P-201ENST00000364982 107 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 MIR10A-201ENST00000385043 110 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 SNORA57.1-201ENST00000391227 145 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 SNORA40C-201ENST00000391285 128 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 RPS26P8-201ENST00000393490 348 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 AL591034.2-201ENST00000402839 359 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 AC108032.1-201ENST00000416706 207 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 NUP35P1-201ENST00000422734 947 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 CKS1BP6-201ENST00000424932 240 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 TOMM20P4-201ENST00000427861 435 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 RPS15AP10-201ENST00000432472 382 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 AC009237.8-201ENST00000445492 379 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 AC112492.4-201ENST00000456549 352 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 UQCRHP4-201ENST00000471686 272 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
HOXA3O43365 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA3O43365 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.59□□□□□ -1.83
HOXA3O43365 SNORA31.19-201ENST00000517079 126 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 MIR2116-201ENST00000517221 80 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA3O43365 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXA3O43365 RPL21P7-201ENST00000557463 483 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 AC005255.1-201ENST00000593748 216 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA3O43365 AL645944.1-201ENST00000603857 493 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 LINC00901.1-201ENST00000617252 152 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 ZYXP1-201ENST00000617638 118 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 AC007792.1-201ENST00000623023 402 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.59□□□□□ -1.83
HOXA3O43365 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
HOXA3O43365 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
HOXA3O43365 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
HOXA3O43365 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXA3O43365 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC3.58□□□□□ -1.84
HOXA3O43365 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXA3O43365 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXA3O43365 CPHL1P-201ENST00000461341 3407 ntBASIC3.58□□□□□ -1.84
HOXA3O43365 AL359693.1-201ENST00000614959 2407 ntBASIC3.58□□□□□ -1.84
HOXA3O43365 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXA3O43365 Y_RNA.380-201ENST00000365663 111 ntBASIC3.58□□□□□ -1.84
HOXA3O43365 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
HOXA3O43365 RNU6-1109P-201ENST00000391187 107 ntBASIC3.58□□□□□ -1.84
HOXA3O43365 AL138885.1-201ENST00000405921 675 ntBASIC3.58□□□□□ -1.84
HOXA3O43365 RNU2-68P-201ENST00000410878 191 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms