Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.29□□□□□ -1.72
RNF4P78317 AL117339.3-201ENST00000418733 162 ntBASIC4.29□□□□□ -1.72
RNF4P78317 RBMY1KP-201ENST00000423480 476 ntBASIC4.29□□□□□ -1.72
RNF4P78317 AC007560.1-201ENST00000426912 237 ntBASIC4.29□□□□□ -1.72
RNF4P78317 MTND3P9-201ENST00000429526 346 ntBASIC4.29□□□□□ -1.72
RNF4P78317 AL159987.2-201ENST00000432754 307 ntBASIC4.29□□□□□ -1.72
RNF4P78317 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.29□□□□□ -1.72
RNF4P78317 RPS24P6-201ENST00000452670 400 ntBASIC4.29□□□□□ -1.72
RNF4P78317 U8.21-201ENST00000459536 136 ntBASIC4.29□□□□□ -1.72
RNF4P78317 AC008958.1-201ENST00000511047 682 ntBASIC4.29□□□□□ -1.72
RNF4P78317 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.29□□□□□ -1.72
RNF4P78317 AC007016.1-201ENST00000512110 244 ntBASIC4.29□□□□□ -1.72
RNF4P78317 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.29□□□□□ -1.72
RNF4P78317 SNORA31.19-201ENST00000517079 126 ntBASIC4.29□□□□□ -1.72
RNF4P78317 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC4.29□□□□□ -1.72
RNF4P78317 AC144568.1-201ENST00000520139 137 ntBASIC4.29□□□□□ -1.72
RNF4P78317 AC023157.2-201ENST00000540596 141 ntBASIC4.29□□□□□ -1.72
RNF4P78317 AMZ2P1-203ENST00000565833 850 ntBASIC4.29□□□□□ -1.72
RNF4P78317 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC4.29□□□□□ -1.72
RNF4P78317 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.29□□□□□ -1.72
RNF4P78317 AC004825.2-201ENST00000616634 455 ntBASIC4.29□□□□□ -1.72
RNF4P78317 AC103858.2-201ENST00000621471 543 ntBASIC4.29□□□□□ -1.72
RNF4P78317 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.29□□□□□ -1.72
RNF4P78317 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.29□□□□□ -1.72
RNF4P78317 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
RNF4P78317 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.29□□□□□ -1.72
RNF4P78317 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
RNF4P78317 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.29□□□□□ -1.72
RNF4P78317 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.28□□□□□ -1.72
RNF4P78317 MTND5P9-201ENST00000503854 1755 ntBASIC4.28□□□□□ -1.72
RNF4P78317 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
RNF4P78317 Y_RNA.64-201ENST00000362845 102 ntBASIC4.28□□□□□ -1.72
RNF4P78317 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
RNF4P78317 AL592291.1-201ENST00000403830 352 ntBASIC4.28□□□□□ -1.72
RNF4P78317 MIR1302-6-201ENST00000408466 90 ntBASIC4.28□□□□□ -1.72
RNF4P78317 NDUFB4P7-201ENST00000423198 363 ntBASIC4.28□□□□□ -1.72
RNF4P78317 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.28□□□□□ -1.72
RNF4P78317 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.28□□□□□ -1.72
RNF4P78317 AL162591.2-201ENST00000449634 317 ntBASIC4.28□□□□□ -1.72
RNF4P78317 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.28□□□□□ -1.72
RNF4P78317 snoU13.4-201ENST00000458916 104 ntBASIC4.28□□□□□ -1.72
RNF4P78317 AK3P2-201ENST00000507976 429 ntBASIC4.28□□□□□ -1.72
RNF4P78317 SNORA25.11-201ENST00000515935 105 ntBASIC4.28□□□□□ -1.72
RNF4P78317 SNORA40.15-201ENST00000516884 107 ntBASIC4.28□□□□□ -1.72
RNF4P78317 RN7SKP92-201ENST00000517266 244 ntBASIC4.28□□□□□ -1.72
RNF4P78317 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.28□□□□□ -1.72
RNF4P78317 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC4.28□□□□□ -1.72
RNF4P78317 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC4.28□□□□□ -1.72
RNF4P78317 AP002826.1-201ENST00000608835 315 ntBASIC4.28□□□□□ -1.72
RNF4P78317 AC064801.1-201ENST00000612025 407 ntBASIC4.28□□□□□ -1.72
RNF4P78317 AP000346.3-201ENST00000622821 210 ntBASIC4.28□□□□□ -1.72
RNF4P78317 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC4.28□□□□□ -1.72
RNF4P78317 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
RNF4P78317 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.28□□□□□ -1.72
RNF4P78317 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
RNF4P78317 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
RNF4P78317 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
RNF4P78317 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.28□□□□□ -1.73
RNF4P78317 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.27□□□□□ -1.73
RNF4P78317 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
RNF4P78317 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
RNF4P78317 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.27□□□□□ -1.73
RNF4P78317 AC021146.4-201ENST00000309229 279 ntBASIC4.27□□□□□ -1.73
RNF4P78317 RNU6-428P-201ENST00000362942 107 ntBASIC4.27□□□□□ -1.73
RNF4P78317 Y_RNA.551-201ENST00000384661 102 ntBASIC4.27□□□□□ -1.73
RNF4P78317 RNA5SP332-201ENST00000391063 115 ntBASIC4.27□□□□□ -1.73
RNF4P78317 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
RNF4P78317 RNU2-33P-201ENST00000410344 192 ntBASIC4.27□□□□□ -1.73
RNF4P78317 RNU2-38P-201ENST00000410856 79 ntBASIC4.27□□□□□ -1.73
RNF4P78317 AC007098.1-201ENST00000420122 367 ntBASIC4.27□□□□□ -1.73
RNF4P78317 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC4.27□□□□□ -1.73
RNF4P78317 AL356867.1-201ENST00000429623 299 ntBASIC4.27□□□□□ -1.73
RNF4P78317 AL627311.1-201ENST00000431514 115 ntBASIC4.27□□□□□ -1.73
RNF4P78317 NDUFB1P2-201ENST00000449477 176 ntBASIC4.27□□□□□ -1.73
RNF4P78317 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC4.27□□□□□ -1.73
RNF4P78317 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC4.27□□□□□ -1.73
RNF4P78317 RPL21P13-201ENST00000488305 481 ntBASIC4.27□□□□□ -1.73
RNF4P78317 RNA5SP165-201ENST00000517142 115 ntBASIC4.27□□□□□ -1.73
RNF4P78317 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.27□□□□□ -1.73
RNF4P78317 AP001781.1-201ENST00000530977 207 ntBASIC4.27□□□□□ -1.73
RNF4P78317 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC4.27□□□□□ -1.73
RNF4P78317 MIR5701-3-201ENST00000578890 82 ntBASIC4.27□□□□□ -1.73
RNF4P78317 MIR5701-1-201ENST00000585138 82 ntBASIC4.27□□□□□ -1.73
RNF4P78317 AP000787.2-201ENST00000604432 568 ntBASIC4.27□□□□□ -1.73
RNF4P78317 AL355810.1-201ENST00000614629 552 ntBASIC4.27□□□□□ -1.73
RNF4P78317 MIR5701-2-201ENST00000615634 82 ntBASIC4.27□□□□□ -1.73
RNF4P78317 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
RNF4P78317 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
RNF4P78317 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.27□□□□□ -1.73
RNF4P78317 AC010615.1-201ENST00000594254 1764 ntBASIC4.27□□□□□ -1.73
RNF4P78317 AC116096.1-201ENST00000566804 2314 ntBASIC4.27□□□□□ -1.73
RNF4P78317 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
RNF4P78317 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
RNF4P78317 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
RNF4P78317 AC011266.1-201ENST00000624119 3569 ntBASIC4.26□□□□□ -1.73
RNF4P78317 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
RNF4P78317 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
RNF4P78317 U3.6-201ENST00000363622 211 ntBASIC4.26□□□□□ -1.73
RNF4P78317 RNU6-595P-201ENST00000363944 107 ntBASIC4.26□□□□□ -1.73
RNF4P78317 RNU4-50P-201ENST00000364361 141 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 136.2 ms