Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC017079.2-201ENST00000416102 485 ntBASIC5□□□□□ -1.61
USP3Q9Y6I4 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC5□□□□□ -1.61
USP3Q9Y6I4 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5□□□□□ -1.61
USP3Q9Y6I4 RPL23AP24-201ENST00000458203 385 ntBASIC5□□□□□ -1.61
USP3Q9Y6I4 MLLT10P2-201ENST00000506434 249 ntBASIC5□□□□□ -1.61
USP3Q9Y6I4 RNA5SP249-201ENST00000516127 99 ntBASIC5□□□□□ -1.61
USP3Q9Y6I4 RNU6-1278P-201ENST00000516130 107 ntBASIC5□□□□□ -1.61
USP3Q9Y6I4 AL110118.1-201ENST00000553543 400 ntBASIC5□□□□□ -1.61
USP3Q9Y6I4 AC105129.1-201ENST00000560250 297 ntBASIC5□□□□□ -1.61
USP3Q9Y6I4 FAM60BP-201ENST00000578364 658 ntBASIC5□□□□□ -1.61
USP3Q9Y6I4 RN7SL690P-201ENST00000582087 240 ntBASIC5□□□□□ -1.61
USP3Q9Y6I4 AL162424.1-201ENST00000602325 221 ntBASIC5□□□□□ -1.61
USP3Q9Y6I4 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC5□□□□□ -1.61
USP3Q9Y6I4 SCARNA4-202ENST00000625402 129 ntBASIC5□□□□□ -1.61
USP3Q9Y6I4 Clostridiales-1.2-201ENST00000636724 160 ntBASIC5□□□□□ -1.61
USP3Q9Y6I4 U4.7-201ENST00000638126 106 ntBASIC5□□□□□ -1.61
USP3Q9Y6I4 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5□□□□□ -1.61
USP3Q9Y6I4 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5□□□□□ -1.61
USP3Q9Y6I4 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
USP3Q9Y6I4 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC5□□□□□ -1.61
USP3Q9Y6I4 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5□□□□□ -1.61
USP3Q9Y6I4 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5□□□□□ -1.61
USP3Q9Y6I4 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5□□□□□ -1.61
USP3Q9Y6I4 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC5□□□□□ -1.61
USP3Q9Y6I4 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5□□□□□ -1.61
USP3Q9Y6I4 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 ZNF826P-207ENST00000622273 1910 ntBASIC4.99□□□□□ -1.61
USP3Q9Y6I4 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 LINC01109-201ENST00000603837 3081 ntBASIC4.99□□□□□ -1.61
USP3Q9Y6I4 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 AC079741.1-201ENST00000321498 212 ntBASIC4.99□□□□□ -1.61
USP3Q9Y6I4 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 RNU6-937P-201ENST00000384325 106 ntBASIC4.99□□□□□ -1.61
USP3Q9Y6I4 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 RPL19P1-201ENST00000411635 428 ntBASIC4.99□□□□□ -1.61
USP3Q9Y6I4 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 COX6CP10-201ENST00000416832 224 ntBASIC4.99□□□□□ -1.61
USP3Q9Y6I4 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 AL358453.1-201ENST00000422522 250 ntBASIC4.99□□□□□ -1.61
USP3Q9Y6I4 AC016831.4-201ENST00000438302 307 ntBASIC4.99□□□□□ -1.61
USP3Q9Y6I4 HSPE1P25-201ENST00000455484 251 ntBASIC4.99□□□□□ -1.61
USP3Q9Y6I4 RPS26P21-201ENST00000475397 348 ntBASIC4.99□□□□□ -1.61
USP3Q9Y6I4 AC020890.1-201ENST00000491837 504 ntBASIC4.99□□□□□ -1.61
USP3Q9Y6I4 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 AKIRIN2P1-201ENST00000505898 352 ntBASIC4.99□□□□□ -1.61
USP3Q9Y6I4 RNA5SP290-201ENST00000517133 127 ntBASIC4.99□□□□□ -1.61
USP3Q9Y6I4 RNA5SP291-201ENST00000517222 105 ntBASIC4.99□□□□□ -1.61
USP3Q9Y6I4 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 MIR7703-201ENST00000620784 77 ntBASIC4.99□□□□□ -1.61
USP3Q9Y6I4 SCARNA4-201ENST00000629045 128 ntBASIC4.99□□□□□ -1.61
USP3Q9Y6I4 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 AC004925.1-201ENST00000624256 2706 ntBASIC4.99□□□□□ -1.61
USP3Q9Y6I4 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
USP3Q9Y6I4 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
USP3Q9Y6I4 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.98□□□□□ -1.61
USP3Q9Y6I4 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.98□□□□□ -1.61
USP3Q9Y6I4 AL022311.1-201ENST00000623726 19416 ntBASIC4.98□□□□□ -1.61
USP3Q9Y6I4 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.98□□□□□ -1.61
USP3Q9Y6I4 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC4.98□□□□□ -1.61
USP3Q9Y6I4 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
USP3Q9Y6I4 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
USP3Q9Y6I4 RNU6-428P-201ENST00000362942 107 ntBASIC4.98□□□□□ -1.61
USP3Q9Y6I4 SNORD115-32-201ENST00000364079 82 ntBASIC4.98□□□□□ -1.61
USP3Q9Y6I4 RNY4P28-201ENST00000365281 93 ntBASIC4.98□□□□□ -1.61
USP3Q9Y6I4 RPL37P18-201ENST00000411602 243 ntBASIC4.98□□□□□ -1.61
USP3Q9Y6I4 Z85995.1-201ENST00000415547 335 ntBASIC4.98□□□□□ -1.61
USP3Q9Y6I4 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.98□□□□□ -1.61
USP3Q9Y6I4 NDUFB4P7-201ENST00000423198 363 ntBASIC4.98□□□□□ -1.61
USP3Q9Y6I4 AC091390.3-201ENST00000426478 338 ntBASIC4.98□□□□□ -1.61
USP3Q9Y6I4 IFNWP4-201ENST00000453148 294 ntBASIC4.98□□□□□ -1.61
USP3Q9Y6I4 AC010326.1-201ENST00000462726 602 ntBASIC4.98□□□□□ -1.61
USP3Q9Y6I4 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.98□□□□□ -1.61
USP3Q9Y6I4 AC109925.1-201ENST00000478069 331 ntBASIC4.98□□□□□ -1.61
USP3Q9Y6I4 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.98□□□□□ -1.61
USP3Q9Y6I4 AC010265.1-201ENST00000513509 211 ntBASIC4.98□□□□□ -1.61
USP3Q9Y6I4 RNU2-31P-201ENST00000516954 155 ntBASIC4.98□□□□□ -1.61
USP3Q9Y6I4 BNIP3P1-201ENST00000547295 580 ntBASIC4.98□□□□□ -1.61
USP3Q9Y6I4 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC4.98□□□□□ -1.61
USP3Q9Y6I4 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.98□□□□□ -1.61
USP3Q9Y6I4 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.98□□□□□ -1.61
USP3Q9Y6I4 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.98□□□□□ -1.61
USP3Q9Y6I4 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.98□□□□□ -1.61
USP3Q9Y6I4 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
USP3Q9Y6I4 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
USP3Q9Y6I4 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 125.3 ms