Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 HMGN2P16-201ENST00000456802 261 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 HMGB1P22-201ENST00000505315 124 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 PRDX4P1-201ENST00000507189 574 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 RNU7-51P-201ENST00000516560 62 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 AC009812.2-201ENST00000517657 457 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 OR4R1P-201ENST00000529879 463 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 AC002546.1-201ENST00000588041 2504 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SIX4Q9UIU6 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SIX4Q9UIU6 Y_RNA.88-201ENST00000363029 99 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 SNORA23-201ENST00000365128 182 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 Y_RNA.481-201ENST00000384373 102 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 MIR483-201ENST00000385070 76 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AL591416.1-201ENST00000404015 867 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AL138885.1-201ENST00000405921 675 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AC022028.1-201ENST00000412054 408 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 MTCO3P12-201ENST00000416718 547 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 MRPL50P2-201ENST00000416821 482 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AC093106.2-201ENST00000428212 385 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 MED13P1-201ENST00000428342 171 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 VDAC1P3-201ENST00000434069 851 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 MTATP6P16-201ENST00000434543 526 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC3.25□□□□□ -1.89
SIX4Q9UIU6 DPPA3P1-201ENST00000448050 469 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 RPL31P58-201ENST00000469001 379 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AC010285.1-201ENST00000470580 392 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AC083798.1-201ENST00000472671 131 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 RPL36AP51-201ENST00000487216 318 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.25□□□□□ -1.89
SIX4Q9UIU6 SNORD27.1-201ENST00000516319 72 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 RNU2-10P-201ENST00000516375 211 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AP005205.1-201ENST00000563503 508 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC3.25□□□□□ -1.89
SIX4Q9UIU6 HMGB1P6-201ENST00000569046 646 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 MIR548S-201ENST00000581352 82 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AC004067.1-201ENST00000608733 700 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AL162274.2-201ENST00000614406 332 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AC002553.4-201ENST00000616896 331 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AC005609.4-201ENST00000625071 447 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AC118273.1-201ENST00000525324 3006 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
SIX4Q9UIU6 AC007256.1-201ENST00000392253 2765 ntBASIC3.25□□□□□ -1.89
SIX4Q9UIU6 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
SIX4Q9UIU6 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.25□□□□□ -1.89
SIX4Q9UIU6 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SIX4Q9UIU6 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SIX4Q9UIU6 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.24□□□□□ -1.89
SIX4Q9UIU6 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SIX4Q9UIU6 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
SIX4Q9UIU6 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SIX4Q9UIU6 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SIX4Q9UIU6 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
SIX4Q9UIU6 RNU6-223P-201ENST00000362830 107 ntBASIC3.24□□□□□ -1.89
SIX4Q9UIU6 RNU6-188P-201ENST00000364207 107 ntBASIC3.24□□□□□ -1.89
SIX4Q9UIU6 SNORA71.1-201ENST00000364523 117 ntBASIC3.24□□□□□ -1.89
SIX4Q9UIU6 RNU5E-6P-201ENST00000365574 115 ntBASIC3.24□□□□□ -1.89
SIX4Q9UIU6 RNU6-641P-201ENST00000384006 107 ntBASIC3.24□□□□□ -1.89
SIX4Q9UIU6 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
SIX4Q9UIU6 AL359634.1-202ENST00000404721 284 ntBASIC3.24□□□□□ -1.89
SIX4Q9UIU6 RNU6-908P-201ENST00000410160 94 ntBASIC3.24□□□□□ -1.89
SIX4Q9UIU6 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.24□□□□□ -1.89
SIX4Q9UIU6 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.24□□□□□ -1.89
SIX4Q9UIU6 GTF2IP20-201ENST00000431663 360 ntBASIC3.24□□□□□ -1.89
SIX4Q9UIU6 HMGB3P12-201ENST00000438745 556 ntBASIC3.24□□□□□ -1.89
SIX4Q9UIU6 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.24□□□□□ -1.89
SIX4Q9UIU6 RPL37P4-201ENST00000448908 268 ntBASIC3.24□□□□□ -1.89
SIX4Q9UIU6 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC3.24□□□□□ -1.89
SIX4Q9UIU6 AC022364.2-201ENST00000457963 554 ntBASIC3.24□□□□□ -1.89
SIX4Q9UIU6 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC3.24□□□□□ -1.89
SIX4Q9UIU6 AC010631.1-201ENST00000474150 156 ntBASIC3.24□□□□□ -1.89
SIX4Q9UIU6 AC233702.1-201ENST00000482905 502 ntBASIC3.24□□□□□ -1.89
SIX4Q9UIU6 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.24□□□□□ -1.89
SIX4Q9UIU6 RPL23AP55-201ENST00000498163 452 ntBASIC3.24□□□□□ -1.89
SIX4Q9UIU6 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.24□□□□□ -1.89
SIX4Q9UIU6 SNORA40.12-201ENST00000516329 111 ntBASIC3.24□□□□□ -1.89
SIX4Q9UIU6 RNU6-835P-201ENST00000516974 104 ntBASIC3.24□□□□□ -1.89
SIX4Q9UIU6 SNORA31.22-201ENST00000517204 135 ntBASIC3.24□□□□□ -1.89
SIX4Q9UIU6 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.24□□□□□ -1.89
SIX4Q9UIU6 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 161.4 ms