Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC0.52□□□□□ -2.33
COL7A1Q02388 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC0.51□□□□□ -2.33
COL7A1Q02388 OR4G2P-201ENST00000328113 903 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC0.51□□□□□ -2.33
COL7A1Q02388 MIR607-201ENST00000385241 96 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 FTH1P15-201ENST00000406984 280 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 MTCO1P3-201ENST00000429327 192 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC0.51□□□□□ -2.33
COL7A1Q02388 AC093510.2-201ENST00000562820 896 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 AL355297.2-201ENST00000604792 129 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 AL355816.1-201ENST00000607951 118 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 AC068787.1-201ENST00000623908 691 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC0.51□□□□□ -2.33
COL7A1Q02388 RNU6-942P-201ENST00000363002 107 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 ATP6V0E1P3-201ENST00000420036 246 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC0.51□□□□□ -2.33
COL7A1Q02388 AC118469.1-201ENST00000442943 488 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC0.51□□□□□ -2.33
COL7A1Q02388 RNU1-98P-201ENST00000458992 160 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC0.51□□□□□ -2.33
COL7A1Q02388 MTCO2P32-201ENST00000514865 403 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 RNU6-347P-201ENST00000516658 105 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC0.51□□□□□ -2.33
COL7A1Q02388 AC090616.5-202ENST00000582111 297 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC0.51□□□□□ -2.33
COL7A1Q02388 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC0.51□□□□□ -2.33
COL7A1Q02388 AC005332.10-201ENST00000612725 619 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.51□□□□□ -2.33
COL7A1Q02388 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC0.51□□□□□ -2.33
COL7A1Q02388 RNA5SP368-201ENST00000364298 116 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 RNU6-185P-201ENST00000384421 107 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 AC244453.4-201ENST00000419150 388 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 AC246680.2-201ENST00000422106 389 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC0.51□□□□□ -2.33
COL7A1Q02388 AL022238.1-201ENST00000442557 355 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC0.51□□□□□ -2.33
COL7A1Q02388 RPL37P6-202ENST00000464216 403 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 AC091965.2-201ENST00000512324 613 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 SYF2P1-201ENST00000550658 413 ntBASIC0.51□□□□□ -2.33
COL7A1Q02388 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
COL7A1Q02388 AC091812.1-201ENST00000432235 1948 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 RNY4P24-201ENST00000362735 96 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 CD24P4-201ENST00000382840 243 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 MIR153-1-201ENST00000384914 90 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC0.5□□□□□ -2.33
COL7A1Q02388 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC0.5□□□□□ -2.33
COL7A1Q02388 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC0.5□□□□□ -2.33
COL7A1Q02388 NF1P3-201ENST00000457709 450 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
COL7A1Q02388 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC0.5□□□□□ -2.33
COL7A1Q02388 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC0.5□□□□□ -2.33
COL7A1Q02388 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
COL7A1Q02388 RNU6-496P-201ENST00000516145 99 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 EIF4A1P12-201ENST00000551910 141 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC0.5□□□□□ -2.33
COL7A1Q02388 AL136363.1-201ENST00000605349 337 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 RPL21P136-201ENST00000605378 396 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC0.5□□□□□ -2.33
COL7A1Q02388 AC006001.4-201ENST00000622243 395 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 AC007785.2-201ENST00000598627 1916 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 AP001350.1-201ENST00000601906 1524 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC0.5□□□□□ -2.33
COL7A1Q02388 SNORA1.3-201ENST00000384676 136 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 XKRYP1-201ENST00000423438 492 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 XKRYP2-201ENST00000432915 492 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 OSTCP8-201ENST00000445117 448 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 SUMO2P2-201ENST00000456482 255 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 HMGN2P16-201ENST00000456802 261 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 RNU6-1218P-201ENST00000458990 108 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 Y_RNA.654-201ENST00000497848 106 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 RNA5SP67-201ENST00000516422 131 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 FAM106CP-201ENST00000582212 507 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 AL050343.2-201ENST00000607338 280 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 AC107214.2-201ENST00000608204 634 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC0.5□□□□□ -2.33
COL7A1Q02388 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.5□□□□□ -2.33
COL7A1Q02388 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC0.5□□□□□ -2.33
COL7A1Q02388 AC110792.3-201ENST00000595906 1614 ntBASIC0.5□□□□□ -2.33
COL7A1Q02388 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC0.5□□□□□ -2.33
COL7A1Q02388 CBX3P1-201ENST00000325243 554 ntBASIC0.49□□□□□ -2.33
COL7A1Q02388 RNU6-600P-201ENST00000362524 99 ntBASIC0.49□□□□□ -2.33
COL7A1Q02388 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC0.49□□□□□ -2.33
COL7A1Q02388 SFR1P1-201ENST00000403720 688 ntBASIC0.49□□□□□ -2.33
COL7A1Q02388 RNU4-65P-201ENST00000410473 140 ntBASIC0.49□□□□□ -2.33
COL7A1Q02388 AC013268.2-201ENST00000420753 337 ntBASIC0.49□□□□□ -2.33
COL7A1Q02388 AC241520.1-201ENST00000422654 1099 ntBASIC0.49□□□□□ -2.33
COL7A1Q02388 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC0.49□□□□□ -2.33
COL7A1Q02388 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC0.49□□□□□ -2.33
COL7A1Q02388 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.49□□□□□ -2.33
COL7A1Q02388 MIR4653-201ENST00000585107 83 ntBASIC0.49□□□□□ -2.33
COL7A1Q02388 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC0.49□□□□□ -2.33
COL7A1Q02388 uc_338.9-201ENST00000617424 182 ntBASIC0.49□□□□□ -2.33
COL7A1Q02388 SNORA14A-201ENST00000364773 135 ntBASIC0.49□□□□□ -2.33
COL7A1Q02388 MIR627-201ENST00000384979 97 ntBASIC0.49□□□□□ -2.33
COL7A1Q02388 SSR1P1-201ENST00000407630 814 ntBASIC0.49□□□□□ -2.33
COL7A1Q02388 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC0.49□□□□□ -2.33
COL7A1Q02388 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC0.49□□□□□ -2.33
COL7A1Q02388 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC0.49□□□□□ -2.33
COL7A1Q02388 AC084033.1-201ENST00000550830 633 ntBASIC0.49□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms