Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AC141273.2-201ENST00000618989 130 ntBASIC5.45□□□□□ -1.54
CHMP3Q9Y3E7 AL031601.2-202ENST00000622650 282 ntBASIC5.45□□□□□ -1.54
CHMP3Q9Y3E7 AC005086.4-201ENST00000623065 213 ntBASIC5.45□□□□□ -1.54
CHMP3Q9Y3E7 BMS1P21-201ENST00000634565 365 ntBASIC5.45□□□□□ -1.54
CHMP3Q9Y3E7 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CHMP3Q9Y3E7 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CHMP3Q9Y3E7 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
CHMP3Q9Y3E7 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
CHMP3Q9Y3E7 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 LINC01109-201ENST00000603837 3081 ntBASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 RNA5SP366-201ENST00000365454 123 ntBASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 RNU6-790P-201ENST00000384479 105 ntBASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 RNU6-817P-201ENST00000391083 104 ntBASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 RNU2-43P-201ENST00000410306 190 ntBASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 RNU6-712P-201ENST00000410558 100 ntBASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 NUTF2P7-201ENST00000453086 375 ntBASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 MTCO3P8-201ENST00000453691 755 ntBASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 RNU6-953P-201ENST00000459154 107 ntBASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 RPL37P6-201ENST00000460682 294 ntBASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 RN7SL41P-201ENST00000476144 297 ntBASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 AC091167.1-201ENST00000492017 396 ntBASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 RN7SL812P-201ENST00000493791 279 ntBASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 HMGB2P1-201ENST00000591146 634 ntBASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 AC096772.1-201ENST00000609146 564 ntBASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 MIR3653-201ENST00000625572 110 ntBASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 AC068724.3-201ENST00000625906 87 ntBASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.44□□□□□ -1.54
CHMP3Q9Y3E7 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 RN7SKP227-201ENST00000364445 330 ntBASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 AL030996.1-201ENST00000411430 235 ntBASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 AC113155.1-201ENST00000511141 769 ntBASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 SNORA25.11-201ENST00000515935 105 ntBASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 RNU6-914P-201ENST00000516749 109 ntBASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 RN7SKP234-201ENST00000517173 224 ntBASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 IGHVIII-2-1-201ENST00000518843 291 ntBASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 SNRPGP16-201ENST00000533275 226 ntBASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 AC090517.1-201ENST00000569307 266 ntBASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 MIR4512-201ENST00000583257 77 ntBASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 AC005344.1-201ENST00000613391 459 ntBASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 AC026951.1-201ENST00000559530 2459 ntBASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CHMP3Q9Y3E7 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 RNU6-1249P-201ENST00000363237 111 ntBASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 RNA5SP175-201ENST00000364275 119 ntBASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 SNORA70C-201ENST00000384538 135 ntBASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 MIR921-201ENST00000401133 56 ntBASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 RNA5SP36-201ENST00000410197 133 ntBASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 RPL23AP2-201ENST00000471227 466 ntBASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 AC110792.1-201ENST00000491826 472 ntBASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 SNORD116-26-201ENST00000516006 96 ntBASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 Y_RNA.673-201ENST00000516306 88 ntBASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 RNU6-840P-201ENST00000517275 65 ntBASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 AC069113.1-201ENST00000517763 267 ntBASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 AC087369.1-201ENST00000520775 996 ntBASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 AC007991.1-201ENST00000522680 631 ntBASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 OR5D17P-201ENST00000531492 978 ntBASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 OR1M4P-201ENST00000589199 287 ntBASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 SNORD39.4-201ENST00000620099 78 ntBASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 AC007546.2-201ENST00000623996 360 ntBASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 AL049555.1-201ENST00000562834 1933 ntBASIC5.42□□□□□ -1.54
CHMP3Q9Y3E7 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms