Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC9.21□□□□□ -0.94
SENP3Q9H4L4 AC095038.3-201ENST00000634439 195 ntBASIC9.21□□□□□ -0.94
SENP3Q9H4L4 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
SENP3Q9H4L4 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC9.21□□□□□ -0.94
SENP3Q9H4L4 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC9.21□□□□□ -0.94
SENP3Q9H4L4 AC126323.6-202ENST00000568092 3511 ntBASIC9.21□□□□□ -0.94
SENP3Q9H4L4 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
SENP3Q9H4L4 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
SENP3Q9H4L4 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
SENP3Q9H4L4 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
SENP3Q9H4L4 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
SENP3Q9H4L4 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
SENP3Q9H4L4 ERG-202ENST00000398897 4651 ntTSL 5 BASIC9.2□□□□□ -0.94
SENP3Q9H4L4 IL1RAP-201ENST00000072516 4697 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
SENP3Q9H4L4 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
SENP3Q9H4L4 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
SENP3Q9H4L4 TFDP2-224ENST00000499676 9335 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
SENP3Q9H4L4 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
SENP3Q9H4L4 DMD-211ENST00000378707 7410 ntTSL 5 BASIC9.2□□□□□ -0.94
SENP3Q9H4L4 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC9.2□□□□□ -0.94
SENP3Q9H4L4 CHURC1-208ENST00000607599 3615 ntTSL 2 BASIC9.2□□□□□ -0.94
SENP3Q9H4L4 AC113412.1-201ENST00000425840 504 ntBASIC9.2□□□□□ -0.94
SENP3Q9H4L4 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC9.2□□□□□ -0.94
SENP3Q9H4L4 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC9.2□□□□□ -0.94
SENP3Q9H4L4 Y_RNA.667-201ENST00000516212 107 ntBASIC9.2□□□□□ -0.94
SENP3Q9H4L4 RNA5SP438-201ENST00000516561 112 ntBASIC9.2□□□□□ -0.94
SENP3Q9H4L4 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC9.2□□□□□ -0.94
SENP3Q9H4L4 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC9.2□□□□□ -0.94
SENP3Q9H4L4 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
SENP3Q9H4L4 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC9.2□□□□□ -0.94
SENP3Q9H4L4 ZHX3-211ENST00000544979 3933 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
SENP3Q9H4L4 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
SENP3Q9H4L4 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC9.19□□□□□ -0.94
SENP3Q9H4L4 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
SENP3Q9H4L4 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC9.19□□□□□ -0.94
SENP3Q9H4L4 DTHD1-201ENST00000357504 3203 ntTSL 2 BASIC9.19□□□□□ -0.94
SENP3Q9H4L4 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC9.19□□□□□ -0.94
SENP3Q9H4L4 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
SENP3Q9H4L4 RNU6-800P-201ENST00000384473 103 ntBASIC9.19□□□□□ -0.94
SENP3Q9H4L4 AC099336.2-201ENST00000422457 254 ntBASIC9.19□□□□□ -0.94
SENP3Q9H4L4 AC099560.2-201ENST00000457554 255 ntBASIC9.19□□□□□ -0.94
SENP3Q9H4L4 AC008155.2-201ENST00000464337 397 ntBASIC9.19□□□□□ -0.94
SENP3Q9H4L4 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC9.19□□□□□ -0.94
SENP3Q9H4L4 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC9.19□□□□□ -0.94
SENP3Q9H4L4 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC9.19□□□□□ -0.94
SENP3Q9H4L4 FTX_3.1-201ENST00000610451 147 ntBASIC9.19□□□□□ -0.94
SENP3Q9H4L4 AC005086.4-201ENST00000623065 213 ntBASIC9.19□□□□□ -0.94
SENP3Q9H4L4 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
SENP3Q9H4L4 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC9.19□□□□□ -0.94
SENP3Q9H4L4 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC9.19□□□□□ -0.94
SENP3Q9H4L4 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
SENP3Q9H4L4 PHKB-201ENST00000299167 5464 ntTSL 5 BASIC9.19□□□□□ -0.94
SENP3Q9H4L4 TDP1-201ENST00000335725 3702 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
SENP3Q9H4L4 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC9.19□□□□□ -0.94
SENP3Q9H4L4 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC9.18□□□□□ -0.94
SENP3Q9H4L4 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
SENP3Q9H4L4 MAPK10-377ENST00000642006 2752 ntBASIC9.18□□□□□ -0.94
SENP3Q9H4L4 AC009237.3-203ENST00000442128 3551 ntBASIC9.18□□□□□ -0.94
SENP3Q9H4L4 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
SENP3Q9H4L4 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC9.18□□□□□ -0.94
SENP3Q9H4L4 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
SENP3Q9H4L4 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC9.18□□□□□ -0.94
SENP3Q9H4L4 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
SENP3Q9H4L4 RPS3AP2-201ENST00000407190 754 ntBASIC9.18□□□□□ -0.94
SENP3Q9H4L4 AL359092.1-201ENST00000417156 265 ntBASIC9.18□□□□□ -0.94
SENP3Q9H4L4 AC092047.1-201ENST00000424997 240 ntBASIC9.18□□□□□ -0.94
SENP3Q9H4L4 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
SENP3Q9H4L4 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
SENP3Q9H4L4 PPBPP1-201ENST00000510807 373 ntBASIC9.18□□□□□ -0.94
SENP3Q9H4L4 SLC13A1-204ENST00000539873 2222 ntTSL 5 BASIC9.18□□□□□ -0.94
SENP3Q9H4L4 AC106785.1-201ENST00000565935 262 ntBASIC9.18□□□□□ -0.94
SENP3Q9H4L4 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC9.18□□□□□ -0.94
SENP3Q9H4L4 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC9.18□□□□□ -0.94
SENP3Q9H4L4 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC9.18□□□□□ -0.94
SENP3Q9H4L4 MFSD8-217ENST00000641178 4374 ntBASIC9.18□□□□□ -0.94
SENP3Q9H4L4 BRD8-202ENST00000254900 4388 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
SENP3Q9H4L4 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
SENP3Q9H4L4 AC026316.3-201ENST00000497988 3097 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
SENP3Q9H4L4 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
SENP3Q9H4L4 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC9.17□□□□□ -0.94
SENP3Q9H4L4 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC9.17□□□□□ -0.94
SENP3Q9H4L4 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC9.17□□□□□ -0.94
SENP3Q9H4L4 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC9.17□□□□□ -0.94
SENP3Q9H4L4 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC9.17□□□□□ -0.94
SENP3Q9H4L4 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC9.17□□□□□ -0.94
SENP3Q9H4L4 SNORA14A-201ENST00000364773 135 ntBASIC9.17□□□□□ -0.94
SENP3Q9H4L4 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC9.17□□□□□ -0.94
SENP3Q9H4L4 SPTLC1P2-201ENST00000407089 121 ntBASIC9.17□□□□□ -0.94
SENP3Q9H4L4 GPS2P1-201ENST00000411761 986 ntBASIC9.17□□□□□ -0.94
SENP3Q9H4L4 RPL31P63-201ENST00000422565 375 ntBASIC9.17□□□□□ -0.94
SENP3Q9H4L4 AP000281.1-201ENST00000444036 316 ntBASIC9.17□□□□□ -0.94
SENP3Q9H4L4 IGHVII-40-1-201ENST00000517316 58 ntBASIC9.17□□□□□ -0.94
SENP3Q9H4L4 AP000769.2-201ENST00000602344 396 ntBASIC9.17□□□□□ -0.94
SENP3Q9H4L4 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC9.17□□□□□ -0.94
SENP3Q9H4L4 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC9.17□□□□□ -0.94
SENP3Q9H4L4 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
SENP3Q9H4L4 UBE3AP2-201ENST00000429033 2259 ntBASIC9.17□□□□□ -0.94
SENP3Q9H4L4 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
SENP3Q9H4L4 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
SENP3Q9H4L4 AC011592.1-201ENST00000624647 3634 ntBASIC9.17□□□□□ -0.94
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms