Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.37□□□□□ -1.87
SKA1Q96BD8 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
SKA1Q96BD8 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
SKA1Q96BD8 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.37□□□□□ -1.87
SKA1Q96BD8 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.37□□□□□ -1.87
SKA1Q96BD8 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SKA1Q96BD8 RNU5E-1-201ENST00000362477 120 ntBASIC3.37□□□□□ -1.87
SKA1Q96BD8 RNU4-1-201ENST00000363925 141 ntBASIC3.37□□□□□ -1.87
SKA1Q96BD8 RNU6-658P-201ENST00000384606 106 ntBASIC3.37□□□□□ -1.87
SKA1Q96BD8 RNU6-750P-201ENST00000390946 107 ntBASIC3.37□□□□□ -1.87
SKA1Q96BD8 SNORA48.5-201ENST00000391143 135 ntBASIC3.37□□□□□ -1.87
SKA1Q96BD8 AL122016.1-201ENST00000403365 367 ntBASIC3.37□□□□□ -1.87
SKA1Q96BD8 AC093106.2-201ENST00000428212 385 ntBASIC3.37□□□□□ -1.87
SKA1Q96BD8 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.37□□□□□ -1.87
SKA1Q96BD8 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.37□□□□□ -1.87
SKA1Q96BD8 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.37□□□□□ -1.87
SKA1Q96BD8 BET1P1-201ENST00000482276 359 ntBASIC3.37□□□□□ -1.87
SKA1Q96BD8 RN7SL283P-201ENST00000489055 303 ntBASIC3.37□□□□□ -1.87
SKA1Q96BD8 AC007182.2-201ENST00000489251 402 ntBASIC3.37□□□□□ -1.87
SKA1Q96BD8 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.37□□□□□ -1.87
SKA1Q96BD8 HMGB1P41-201ENST00000520234 440 ntBASIC3.37□□□□□ -1.87
SKA1Q96BD8 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.37□□□□□ -1.87
SKA1Q96BD8 AC007834.2-201ENST00000536310 343 ntBASIC3.37□□□□□ -1.87
SKA1Q96BD8 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.37□□□□□ -1.87
SKA1Q96BD8 AC008250.2-201ENST00000615261 205 ntBASIC3.37□□□□□ -1.87
SKA1Q96BD8 AC019226.2-201ENST00000625973 424 ntBASIC3.37□□□□□ -1.87
SKA1Q96BD8 AL512643.1-201ENST00000635735 524 ntBASIC3.37□□□□□ -1.87
SKA1Q96BD8 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SKA1Q96BD8 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.37□□□□□ -1.87
SKA1Q96BD8 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.37□□□□□ -1.87
SKA1Q96BD8 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
SKA1Q96BD8 MTND4P35-201ENST00000604257 1375 ntBASIC3.37□□□□□ -1.87
SKA1Q96BD8 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
SKA1Q96BD8 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.36□□□□□ -1.87
SKA1Q96BD8 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
SKA1Q96BD8 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SKA1Q96BD8 RNU4-91P-201ENST00000364778 135 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 RNY3P10-201ENST00000384764 102 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 MIR128-1-201ENST00000384921 82 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 RPS3AP3-201ENST00000411933 242 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 HMGN1P14-201ENST00000412459 517 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.36□□□□□ -1.87
SKA1Q96BD8 NPM1P11-201ENST00000417106 855 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC3.36□□□□□ -1.87
SKA1Q96BD8 AC007283.2-201ENST00000424739 197 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC3.36□□□□□ -1.87
SKA1Q96BD8 RPS24P1-201ENST00000438550 371 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 MTND6P13-201ENST00000443510 523 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 COX6CP2-201ENST00000444980 225 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.36□□□□□ -1.87
SKA1Q96BD8 SNRPGP9-201ENST00000456025 225 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.36□□□□□ -1.87
SKA1Q96BD8 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 AC245166.1-201ENST00000521012 253 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.36□□□□□ -1.87
SKA1Q96BD8 OSBPL9P5-201ENST00000542581 171 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.36□□□□□ -1.87
SKA1Q96BD8 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SKA1Q96BD8 MIR4325-201ENST00000583049 90 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 AC073657.2-201ENST00000605661 303 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 AC022893.3-201ENST00000607665 437 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 AL451064.1-201ENST00000607718 471 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC3.36□□□□□ -1.87
SKA1Q96BD8 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.36□□□□□ -1.87
SKA1Q96BD8 AC097520.1-201ENST00000624435 385 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 Z99571.1-201ENST00000636677 394 ntBASIC3.36□□□□□ -1.87
SKA1Q96BD8 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
SKA1Q96BD8 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SKA1Q96BD8 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.35□□□□□ -1.87
SKA1Q96BD8 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.35□□□□□ -1.87
SKA1Q96BD8 AC017071.1-201ENST00000564407 2204 ntBASIC3.35□□□□□ -1.87
SKA1Q96BD8 NACAP2-201ENST00000318548 624 ntBASIC3.35□□□□□ -1.87
SKA1Q96BD8 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SKA1Q96BD8 RNU6-188P-201ENST00000364207 107 ntBASIC3.35□□□□□ -1.87
SKA1Q96BD8 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
SKA1Q96BD8 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.35□□□□□ -1.87
SKA1Q96BD8 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.35□□□□□ -1.87
SKA1Q96BD8 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC3.35□□□□□ -1.87
SKA1Q96BD8 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.35□□□□□ -1.87
SKA1Q96BD8 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC3.35□□□□□ -1.87
SKA1Q96BD8 MTATP6P17-201ENST00000431030 672 ntBASIC3.35□□□□□ -1.87
SKA1Q96BD8 PGBD4P3-201ENST00000440731 581 ntBASIC3.35□□□□□ -1.87
SKA1Q96BD8 AC008264.1-201ENST00000447612 367 ntBASIC3.35□□□□□ -1.87
SKA1Q96BD8 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC3.35□□□□□ -1.87
SKA1Q96BD8 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SKA1Q96BD8 AL033528.1-201ENST00000453780 140 ntBASIC3.35□□□□□ -1.87
SKA1Q96BD8 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.35□□□□□ -1.87
SKA1Q96BD8 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.35□□□□□ -1.87
SKA1Q96BD8 RNU6-703P-201ENST00000516946 107 ntBASIC3.35□□□□□ -1.87
SKA1Q96BD8 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.35□□□□□ -1.87
SKA1Q96BD8 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.35□□□□□ -1.87
SKA1Q96BD8 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC3.35□□□□□ -1.87
SKA1Q96BD8 GLYCAM1-201ENST00000546596 285 ntBASIC3.35□□□□□ -1.87
SKA1Q96BD8 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.35□□□□□ -1.87
SKA1Q96BD8 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.35□□□□□ -1.87
SKA1Q96BD8 MIR5004-201ENST00000579078 107 ntBASIC3.35□□□□□ -1.87
SKA1Q96BD8 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.35□□□□□ -1.87
SKA1Q96BD8 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC3.35□□□□□ -1.87
SKA1Q96BD8 AC121247.2-201ENST00000604776 136 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms