Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 AL732292.1-201ENST00000426692 226 ntBASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 HSPD1P21-201ENST00000436541 245 ntBASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 NUTF2P3-201ENST00000448540 384 ntBASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 SUMO2P6-201ENST00000505273 288 ntBASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 APOOP4-201ENST00000513530 597 ntBASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 RNA5SP392-201ENST00000516905 112 ntBASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 AC109479.2-201ENST00000517842 174 ntBASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 AC104581.2-201ENST00000572227 430 ntBASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 AC024614.2-201ENST00000577584 372 ntBASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 RN7SL690P-201ENST00000582087 240 ntBASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 AC107294.1-201ENST00000609524 467 ntBASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 AC240442.1-201ENST00000616055 283 ntBASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 AC099654.2-201ENST00000433031 1980 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 AC125336.1-201ENST00000508893 2827 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 RNA5SP52-201ENST00000362448 134 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 Y_RNA.33-201ENST00000362591 102 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 RNU6-1249P-201ENST00000363237 111 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 RN7SKP227-201ENST00000364445 330 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 RNA5SP515-201ENST00000364570 118 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 Y_RNA.405-201ENST00000383979 100 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 Y_RNA.451-201ENST00000384200 100 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 Y_RNA.524-201ENST00000384564 100 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 Y_RNA.561-201ENST00000384694 100 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 RNU6-712P-201ENST00000410558 100 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 RPL19P1-201ENST00000411635 428 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 SNORD56-201ENST00000413522 71 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 AC005154.2-201ENST00000438110 379 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 EIF4A1P11-201ENST00000451239 222 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 RNU6-927P-201ENST00000516199 100 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 AP006245.1-201ENST00000522549 120 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 BNIP3P5-201ENST00000562290 498 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 CYCSP40-201ENST00000575927 294 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 MIR3144-201ENST00000579460 79 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 MIR3936-201ENST00000584304 110 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 RN7SL435P-201ENST00000584418 282 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 RPL23AP78-201ENST00000599928 470 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 U73479.1-201ENST00000618062 168 ntBASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
SH3RF1Q7Z6J0 SMG1P6-201ENST00000532337 2930 ntBASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 SAGE2P-201ENST00000420011 2126 ntBASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 AL672167.1-205ENST00000641112 3080 ntBASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 RNU6-804P-201ENST00000384286 107 ntBASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 RNU6-146P-201ENST00000384602 108 ntBASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 RNU6-1168P-201ENST00000390831 104 ntBASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 CKS1BP6-201ENST00000424932 240 ntBASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 RPL23AP1-201ENST00000428990 471 ntBASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 AC000111.2-201ENST00000448200 210 ntBASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 ANXA2P1-201ENST00000505539 926 ntBASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 AK3P2-201ENST00000507976 429 ntBASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 RNA5SP249-201ENST00000516127 99 ntBASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 IGHVIII-2-1-201ENST00000518843 291 ntBASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 AC023824.2-201ENST00000566185 400 ntBASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 FAM91A3P-201ENST00000456826 2544 ntBASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SH3RF1Q7Z6J0 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
SH3RF1Q7Z6J0 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SH3RF1Q7Z6J0 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SH3RF1Q7Z6J0 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.53□□□□□ -1.52
SH3RF1Q7Z6J0 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SH3RF1Q7Z6J0 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
SH3RF1Q7Z6J0 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
SH3RF1Q7Z6J0 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
SH3RF1Q7Z6J0 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 189.5 ms