Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC5.09□□□□□ -1.59
USP3Q9Y6I4 RPS5P7-201ENST00000456664 608 ntBASIC5.09□□□□□ -1.59
USP3Q9Y6I4 RN7SL558P-201ENST00000497468 299 ntBASIC5.09□□□□□ -1.59
USP3Q9Y6I4 SCARNA22-201ENST00000503991 125 ntBASIC5.09□□□□□ -1.59
USP3Q9Y6I4 OR7H2P-201ENST00000513483 306 ntBASIC5.09□□□□□ -1.59
USP3Q9Y6I4 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC5.09□□□□□ -1.59
USP3Q9Y6I4 HIGD1AP5-201ENST00000529959 259 ntBASIC5.09□□□□□ -1.59
USP3Q9Y6I4 MRPS36P4-201ENST00000534436 298 ntBASIC5.09□□□□□ -1.59
USP3Q9Y6I4 AC103996.1-201ENST00000555468 102 ntBASIC5.09□□□□□ -1.59
USP3Q9Y6I4 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC5.09□□□□□ -1.59
USP3Q9Y6I4 MIR3667-201ENST00000581025 74 ntBASIC5.09□□□□□ -1.59
USP3Q9Y6I4 AC022726.1-201ENST00000587475 207 ntBASIC5.09□□□□□ -1.59
USP3Q9Y6I4 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.09□□□□□ -1.59
USP3Q9Y6I4 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC5.09□□□□□ -1.59
USP3Q9Y6I4 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
USP3Q9Y6I4 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
USP3Q9Y6I4 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
USP3Q9Y6I4 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
USP3Q9Y6I4 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
USP3Q9Y6I4 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC5.09□□□□□ -1.6
USP3Q9Y6I4 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
USP3Q9Y6I4 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.08□□□□□ -1.6
USP3Q9Y6I4 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC5.08□□□□□ -1.6
USP3Q9Y6I4 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
USP3Q9Y6I4 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
USP3Q9Y6I4 DEFB108F-201ENST00000344638 222 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 Y_RNA.16-201ENST00000362421 102 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 RNU4-90P-201ENST00000362773 141 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 U3.6-201ENST00000363622 211 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 RNVU1-6-201ENST00000364688 164 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 RNA5SP240-201ENST00000365355 128 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 MIR514A1-201ENST00000385133 98 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
USP3Q9Y6I4 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC5.08□□□□□ -1.6
USP3Q9Y6I4 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.08□□□□□ -1.6
USP3Q9Y6I4 AL606753.1-201ENST00000427435 87 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 AC007389.2-201ENST00000434630 306 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 AL772161.1-201ENST00000439130 476 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 HIGD1AP2-201ENST00000446367 280 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 AL359073.1-201ENST00000448036 403 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 FABP5P15-201ENST00000453566 214 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 RNU6-1012P-201ENST00000516606 109 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 IGKV1-32-201ENST00000519290 311 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 AC005476.1-201ENST00000554427 397 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.08□□□□□ -1.6
USP3Q9Y6I4 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC5.08□□□□□ -1.6
USP3Q9Y6I4 MIR5699-201ENST00000578903 90 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 AC091042.1-201ENST00000579213 173 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 SNORA74C-1-201ENST00000580726 201 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 AC010620.2-201ENST00000600135 313 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 AC240442.1-201ENST00000616055 283 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
USP3Q9Y6I4 AL672167.1-204ENST00000641875 3017 ntBASIC5.08□□□□□ -1.6
USP3Q9Y6I4 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.08□□□□□ -1.6
USP3Q9Y6I4 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
USP3Q9Y6I4 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC5.08□□□□□ -1.6
USP3Q9Y6I4 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
USP3Q9Y6I4 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
USP3Q9Y6I4 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
USP3Q9Y6I4 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
USP3Q9Y6I4 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
USP3Q9Y6I4 SNORD113-8-201ENST00000363497 74 ntBASIC5.07□□□□□ -1.6
USP3Q9Y6I4 RN7SKP103-201ENST00000363848 320 ntBASIC5.07□□□□□ -1.6
USP3Q9Y6I4 Y_RNA.506-201ENST00000384494 102 ntBASIC5.07□□□□□ -1.6
USP3Q9Y6I4 SNORA53-201ENST00000391141 249 ntBASIC5.07□□□□□ -1.6
USP3Q9Y6I4 MTCO1P39-201ENST00000426148 480 ntBASIC5.07□□□□□ -1.6
USP3Q9Y6I4 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC5.07□□□□□ -1.6
USP3Q9Y6I4 RNU7-87P-201ENST00000459343 62 ntBASIC5.07□□□□□ -1.6
USP3Q9Y6I4 RPS29P27-201ENST00000463711 170 ntBASIC5.07□□□□□ -1.6
USP3Q9Y6I4 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC5.07□□□□□ -1.6
USP3Q9Y6I4 AL671862.1-201ENST00000515851 349 ntBASIC5.07□□□□□ -1.6
USP3Q9Y6I4 RNU6-496P-201ENST00000516145 99 ntBASIC5.07□□□□□ -1.6
USP3Q9Y6I4 SCARNA24.2-201ENST00000516968 130 ntBASIC5.07□□□□□ -1.6
USP3Q9Y6I4 FTH1P11-201ENST00000517577 551 ntBASIC5.07□□□□□ -1.6
USP3Q9Y6I4 IGHVII-53-1-201ENST00000519538 255 ntBASIC5.07□□□□□ -1.6
USP3Q9Y6I4 AP001880.2-201ENST00000538233 448 ntBASIC5.07□□□□□ -1.6
USP3Q9Y6I4 AC007458.1-201ENST00000542812 373 ntBASIC5.07□□□□□ -1.6
USP3Q9Y6I4 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC5.07□□□□□ -1.6
USP3Q9Y6I4 AC090617.3-201ENST00000573670 475 ntBASIC5.07□□□□□ -1.6
USP3Q9Y6I4 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC5.07□□□□□ -1.6
USP3Q9Y6I4 AC100827.5-201ENST00000615883 426 ntBASIC5.07□□□□□ -1.6
USP3Q9Y6I4 AL360181.4-201ENST00000621752 134 ntBASIC5.07□□□□□ -1.6
USP3Q9Y6I4 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC5.07□□□□□ -1.6
USP3Q9Y6I4 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
USP3Q9Y6I4 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC5.07□□□□□ -1.6
USP3Q9Y6I4 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
USP3Q9Y6I4 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
USP3Q9Y6I4 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
USP3Q9Y6I4 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 TLK1P1-201ENST00000456760 2440 ntBASIC5.06□□□□□ -1.6
USP3Q9Y6I4 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.06□□□□□ -1.6
USP3Q9Y6I4 SNORD63-201ENST00000384262 68 ntBASIC5.06□□□□□ -1.6
USP3Q9Y6I4 AL079342.1-201ENST00000401460 267 ntBASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms