Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 IGKV1OR2-6-201ENST00000603485 277 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 BNIP3P9-201ENST00000603714 553 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 AC099654.5-201ENST00000636479 350 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 RNU6-1287P-201ENST00000362914 107 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 Y_RNA.86-201ENST00000363020 111 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 Y_RNA.279-201ENST00000364763 95 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 RNU6-1060P-201ENST00000384664 107 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 Y_RNA.576-201ENST00000384781 102 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 MIR607-201ENST00000385241 96 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 RNU6-817P-201ENST00000391083 104 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 CD3D-202ENST00000392884 476 ntTSL 2 BASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 AC009161.1-201ENST00000417306 376 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 ARL5AP1-201ENST00000418991 388 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 RPL27AP8-201ENST00000424277 446 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 AC093106.2-201ENST00000428212 385 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 SNRPFP3-201ENST00000457792 225 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 RPS4XP2-201ENST00000458402 793 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 AP000852.1-201ENST00000472460 573 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 AC110768.1-201ENST00000509222 400 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 AL359273.1-201ENST00000510918 627 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 SNORA31.8-201ENST00000516327 108 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 RNU6-677P-201ENST00000516914 101 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 RNU6-1073P-201ENST00000517182 106 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 OR5B19P-201ENST00000531766 928 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 OR5B10P-201ENST00000532869 642 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 AC018638.8-201ENST00000588755 281 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 AC010525.2-201ENST00000590920 195 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 AP002826.1-201ENST00000608835 315 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 U4.6-201ENST00000621618 127 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 AL513302.2-201ENST00000562313 1842 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 MTND4P12-201ENST00000498999 1377 ntBASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
LIMCH1Q9UPQ0 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 RN7SKP280-201ENST00000364196 304 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 RNA5SP515-201ENST00000364570 118 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 RNA5SP479-201ENST00000364858 117 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AL606923.1-201ENST00000406616 190 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 RN7SKP140-201ENST00000411196 284 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AL513331.1-201ENST00000411908 397 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AL035423.1-201ENST00000420331 213 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 RPL21P66-201ENST00000426566 466 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 HMGB1P27-201ENST00000431429 603 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 TRAPPC2P3-201ENST00000443200 321 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 CBWD4P-201ENST00000445695 655 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 RPL39P36-201ENST00000490784 156 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AP001086.1-201ENST00000494882 321 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AC008628.2-201ENST00000502605 298 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AC114786.4-201ENST00000508771 728 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AC098591.2-201ENST00000510152 315 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AC010486.1-201ENST00000511793 424 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 SNORA31.3-201ENST00000516029 96 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 RN7SKP21-201ENST00000516503 220 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 RNU6-685P-201ENST00000517088 95 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 ADI1P3-201ENST00000549509 470 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 MED28P6-201ENST00000558776 231 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AC006270.2-201ENST00000578523 652 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AC091135.1-201ENST00000585943 307 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AC011712.1-201ENST00000588959 234 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AC067852.3-201ENST00000589177 561 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AC010338.1-201ENST00000621823 717 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 AC068724.3-201ENST00000625906 87 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 ASNSP3-201ENST00000451989 1306 ntBASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
LIMCH1Q9UPQ0 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms