Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SNORA43.2-201ENST00000516652 128 ntBASIC5.68□□□□□ -1.5
COL9A1P20849 SMILR-201ENST00000533992 553 ntTSL 4 BASIC5.68□□□□□ -1.5
COL9A1P20849 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.68□□□□□ -1.5
COL9A1P20849 MIR4301-201ENST00000577203 66 ntBASIC5.68□□□□□ -1.5
COL9A1P20849 AC012616.1-201ENST00000600294 197 ntBASIC5.68□□□□□ -1.5
COL9A1P20849 AL391358.1-201ENST00000605342 190 ntBASIC5.68□□□□□ -1.5
COL9A1P20849 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC5.68□□□□□ -1.5
COL9A1P20849 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC5.68□□□□□ -1.5
COL9A1P20849 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC5.68□□□□□ -1.5
COL9A1P20849 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.68□□□□□ -1.5
COL9A1P20849 AC009779.8-201ENST00000641684 4384 ntBASIC5.68□□□□□ -1.5
COL9A1P20849 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL9A1P20849 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL9A1P20849 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC5.68□□□□□ -1.5
COL9A1P20849 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.68□□□□□ -1.5
COL9A1P20849 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC5.68□□□□□ -1.5
COL9A1P20849 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL9A1P20849 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC5.68□□□□□ -1.5
COL9A1P20849 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL9A1P20849 TEK-204ENST00000519097 3836 ntTSL 2 BASIC5.67□□□□□ -1.5
COL9A1P20849 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL9A1P20849 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
COL9A1P20849 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL9A1P20849 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
COL9A1P20849 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
COL9A1P20849 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL9A1P20849 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL9A1P20849 snoU2_19.4-201ENST00000364329 80 ntBASIC5.67□□□□□ -1.5
COL9A1P20849 SNORA70E-201ENST00000384492 135 ntBASIC5.67□□□□□ -1.5
COL9A1P20849 RNU6-146P-201ENST00000384602 108 ntBASIC5.67□□□□□ -1.5
COL9A1P20849 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC5.67□□□□□ -1.5
COL9A1P20849 Z85995.1-201ENST00000415547 335 ntBASIC5.67□□□□□ -1.5
COL9A1P20849 AC138623.1-201ENST00000418060 216 ntBASIC5.67□□□□□ -1.5
COL9A1P20849 AC063976.4-201ENST00000421971 163 ntBASIC5.67□□□□□ -1.5
COL9A1P20849 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC5.67□□□□□ -1.5
COL9A1P20849 AL590399.4-201ENST00000436561 601 ntBASIC5.67□□□□□ -1.5
COL9A1P20849 AL358232.1-201ENST00000448030 501 ntBASIC5.67□□□□□ -1.5
COL9A1P20849 U8.19-201ENST00000459095 133 ntBASIC5.67□□□□□ -1.5
COL9A1P20849 AL132838.2-201ENST00000492041 314 ntBASIC5.67□□□□□ -1.5
COL9A1P20849 AC023818.1-201ENST00000498379 384 ntBASIC5.67□□□□□ -1.5
COL9A1P20849 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.67□□□□□ -1.5
COL9A1P20849 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC5.67□□□□□ -1.5
COL9A1P20849 AC091874.1-201ENST00000511402 339 ntBASIC5.67□□□□□ -1.5
COL9A1P20849 RNU6-941P-201ENST00000516346 108 ntBASIC5.67□□□□□ -1.5
COL9A1P20849 NDUFA5P6-201ENST00000542110 379 ntBASIC5.67□□□□□ -1.5
COL9A1P20849 AC008033.2-201ENST00000542626 177 ntBASIC5.67□□□□□ -1.5
COL9A1P20849 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC5.67□□□□□ -1.5
COL9A1P20849 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC5.67□□□□□ -1.5
COL9A1P20849 MIR5571-201ENST00000577998 113 ntBASIC5.67□□□□□ -1.5
COL9A1P20849 AC091932.3-201ENST00000624223 323 ntBASIC5.67□□□□□ -1.5
COL9A1P20849 MIR3914-2-201ENST00000637339 95 ntBASIC5.67□□□□□ -1.5
COL9A1P20849 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL9A1P20849 AC011504.1-201ENST00000623331 4103 ntBASIC5.67□□□□□ -1.5
COL9A1P20849 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL9A1P20849 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL9A1P20849 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL9A1P20849 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL9A1P20849 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL9A1P20849 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL9A1P20849 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.67□□□□□ -1.5
COL9A1P20849 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC5.67□□□□□ -1.5
COL9A1P20849 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC5.67□□□□□ -1.5
COL9A1P20849 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL9A1P20849 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL9A1P20849 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL9A1P20849 AC005725.1-201ENST00000577346 2607 ntBASIC5.66□□□□□ -1.5
COL9A1P20849 AC034229.2-201ENST00000566945 2508 ntBASIC5.66□□□□□ -1.5
COL9A1P20849 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL9A1P20849 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL9A1P20849 DEFB108F-201ENST00000344638 222 ntBASIC5.66□□□□□ -1.5
COL9A1P20849 RNU6-1074P-201ENST00000383995 104 ntBASIC5.66□□□□□ -1.5
COL9A1P20849 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
COL9A1P20849 AC112220.1-201ENST00000434628 355 ntBASIC5.66□□□□□ -1.5
COL9A1P20849 SNORA59A-201ENST00000459326 152 ntBASIC5.66□□□□□ -1.5
COL9A1P20849 AC107016.1-201ENST00000550463 337 ntBASIC5.66□□□□□ -1.5
COL9A1P20849 AL121603.1-201ENST00000553815 142 ntBASIC5.66□□□□□ -1.5
COL9A1P20849 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.66□□□□□ -1.5
COL9A1P20849 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.66□□□□□ -1.5
COL9A1P20849 AC025574.2-201ENST00000615621 514 ntBASIC5.66□□□□□ -1.5
COL9A1P20849 AC024581.2-201ENST00000619986 252 ntBASIC5.66□□□□□ -1.5
COL9A1P20849 MIR6844-201ENST00000637122 62 ntBASIC5.66□□□□□ -1.5
COL9A1P20849 AC068647.2-201ENST00000637380 353 ntBASIC5.66□□□□□ -1.5
COL9A1P20849 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
COL9A1P20849 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.66□□□□□ -1.5
COL9A1P20849 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL9A1P20849 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.66□□□□□ -1.5
COL9A1P20849 DMD-228ENST00000541735 7080 ntTSL 5 BASIC5.66□□□□□ -1.5
COL9A1P20849 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL9A1P20849 AC107027.3-201ENST00000565095 3473 ntBASIC5.65□□□□□ -1.5
COL9A1P20849 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL9A1P20849 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
COL9A1P20849 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL9A1P20849 RNU6-873P-201ENST00000363833 107 ntBASIC5.65□□□□□ -1.5
COL9A1P20849 RNU6-173P-201ENST00000364215 104 ntBASIC5.65□□□□□ -1.5
COL9A1P20849 SNORD32A-201ENST00000364805 84 ntBASIC5.65□□□□□ -1.5
COL9A1P20849 RNU6-1180P-201ENST00000364935 107 ntBASIC5.65□□□□□ -1.5
COL9A1P20849 Y_RNA.525-201ENST00000384570 113 ntBASIC5.65□□□□□ -1.5
COL9A1P20849 U3.37-201ENST00000408528 213 ntBASIC5.65□□□□□ -1.5
COL9A1P20849 RPS21P8-201ENST00000413365 247 ntBASIC5.65□□□□□ -1.5
COL9A1P20849 AC009963.1-201ENST00000417265 157 ntBASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms