Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC3.71□□□□□ -1.82
HOXA3O43365 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC3.71□□□□□ -1.82
HOXA3O43365 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXA3O43365 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXA3O43365 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
HOXA3O43365 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
HOXA3O43365 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA3O43365 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
HOXA3O43365 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXA3O43365 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA3O43365 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA3O43365 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC3.7□□□□□ -1.82
HOXA3O43365 AC021146.4-201ENST00000309229 279 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 RNU1-115P-201ENST00000365329 160 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 RNU6-1181P-201ENST00000384191 106 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 RNU6-1025P-201ENST00000410629 104 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 AC096664.2-201ENST00000411843 406 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 HMGB3P2-201ENST00000411913 584 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 RPS12P10-201ENST00000427031 377 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 AC096644.2-201ENST00000429278 159 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 AC011998.1-201ENST00000433403 117 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 BTF3P6-201ENST00000448054 499 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 HMGB3P30-201ENST00000457863 606 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXA3O43365 snoU13.4-201ENST00000458916 104 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 RPL7AP28-201ENST00000464513 571 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 AC010618.1-201ENST00000469924 477 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXA3O43365 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXA3O43365 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXA3O43365 RNA5SP249-201ENST00000516127 99 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 RNA5SP360-201ENST00000516555 118 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.7□□□□□ -1.82
HOXA3O43365 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA3O43365 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXA3O43365 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.7□□□□□ -1.82
HOXA3O43365 FKBP1BP1-201ENST00000553366 325 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 MIR3149-201ENST00000584629 83 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXA3O43365 AC092447.9-201ENST00000603395 144 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 AC104695.3-201ENST00000604052 296 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 IGKV2OR2-2-201ENST00000605025 300 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 AP002826.1-201ENST00000608835 315 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXA3O43365 AC011944.2-201ENST00000624440 683 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXA3O43365 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXA3O43365 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA3O43365 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA3O43365 BBX-203ENST00000402543 3980 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXA3O43365 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXA3O43365 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA3O43365 OR51H2P-202ENST00000641424 3046 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXA3O43365 CDC27P3-201ENST00000635418 1910 ntBASIC3.7□□□□□ -1.82
HOXA3O43365 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
HOXA3O43365 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.69□□□□□ -1.82
HOXA3O43365 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXA3O43365 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.69□□□□□ -1.82
HOXA3O43365 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
HOXA3O43365 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXA3O43365 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXA3O43365 Y_RNA.80-201ENST00000362996 102 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 Z85995.1-201ENST00000415547 335 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 AL356387.2-201ENST00000422272 243 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 NDUFB4P7-201ENST00000423198 363 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXA3O43365 AL356867.1-201ENST00000429623 299 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 AL158071.1-201ENST00000430315 461 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXA3O43365 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXA3O43365 USP9YP7-201ENST00000436723 430 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 RPL23AP93-201ENST00000440847 484 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 AC011816.1-201ENST00000441346 546 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 HMGN2P21-201ENST00000447764 270 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 USP9YP32-201ENST00000452432 430 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 SCARNA10-201ENST00000459255 330 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 RPS20P22-201ENST00000473700 357 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 NIP7P2-201ENST00000485801 544 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 AC011005.2-201ENST00000487324 359 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 AL160314.1-201ENST00000490836 438 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 DEFB109F-201ENST00000491870 277 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXA3O43365 SNORA31.8-201ENST00000516327 108 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 RNU6-1256P-201ENST00000516539 103 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HOXA3O43365 AC084851.1-201ENST00000529105 249 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 AC109446.1-201ENST00000566172 220 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXA3O43365 MIR3939-201ENST00000582614 106 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 AC093227.2-201ENST00000589357 285 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 AC123912.5-201ENST00000605470 343 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 MIR6716-201ENST00000613413 80 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXA3O43365 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
HOXA3O43365 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 AC005592.1-201ENST00000566527 1640 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 AL158163.1-201ENST00000603915 1649 ntBASIC3.69□□□□□ -1.82
HOXA3O43365 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXA3O43365 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms