Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RNU6-1037P-201ENST00000459571 107 ntBASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 AC018437.1-201ENST00000492214 406 ntBASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 HPRT1P3-201ENST00000539521 576 ntBASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 MIR4697-201ENST00000582977 78 ntBASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 RNF138P2-201ENST00000603490 592 ntBASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 AC019193.3-201ENST00000609144 554 ntBASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 TEX41-265ENST00000627785 704 ntTSL 5 BASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 MTND4LP32-201ENST00000636111 270 ntBASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 AC107068.1-201ENST00000563286 4218 ntBASIC5.15□□□□□ -1.59
TRAIPQ9BWF2 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 RNU6-778P-201ENST00000363269 103 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 RNU5E-7P-201ENST00000365290 117 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 AP000580.1-201ENST00000404439 358 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 RNU4-25P-201ENST00000410569 230 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 PCMTD1P1-201ENST00000455560 355 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 CEACAMP4-201ENST00000457676 421 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 Y_RNA.653-201ENST00000459091 95 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 snoU109.2-201ENST00000459316 135 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 Y_RNA.701-201ENST00000516812 110 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 AC010186.2-204ENST00000537668 439 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 AC093249.4-201ENST00000564755 259 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 AC069061.3-201ENST00000582254 823 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 AC008638.3-201ENST00000603341 463 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 HSPE1P7-201ENST00000604681 321 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 AL356218.2-201ENST00000605264 187 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 AC083809.1-201ENST00000615051 472 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 AL138880.2-201ENST00000616214 239 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 AC244517.12-201ENST00000623581 663 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 AC008725.1-201ENST00000605123 2263 ntBASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
TRAIPQ9BWF2 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 DHX9P1-201ENST00000436565 3076 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 Y_RNA.419-201ENST00000384041 102 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 RNU6-790P-201ENST00000384479 105 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 AC091390.1-201ENST00000433904 331 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 AC124916.1-201ENST00000444020 547 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 HIGD1AP2-201ENST00000446367 280 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 AL451050.1-201ENST00000450126 415 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 AC079168.2-201ENST00000453977 416 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 AL445433.1-201ENST00000457507 257 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 RPL36AP41-201ENST00000493820 306 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 Y_RNA.718-201ENST00000517110 102 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 AC009643.1-201ENST00000532030 391 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 AC084783.1-201ENST00000565846 910 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 AC136624.4-201ENST00000573044 370 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 AC012468.1-201ENST00000604888 430 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 AL160281.1-201ENST00000605307 311 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 AL353621.2-201ENST00000605340 133 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 AC123912.5-201ENST00000605470 343 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 AC124303.1-201ENST00000605703 360 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 RNU6ATAC35P-201ENST00000609276 444 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 AL158196.1-201ENST00000616786 434 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 U2.21-201ENST00000637295 81 ntBASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRAIPQ9BWF2 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.12□□□□□ -1.59
TRAIPQ9BWF2 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms