Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXD9P28356 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXD9P28356 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD9P28356 AP001350.1-201ENST00000601906 1524 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXD9P28356 RNU6-600P-201ENST00000362524 99 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 RNU4-35P-201ENST00000362588 141 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 RNA5SP50-201ENST00000363731 107 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 RNA5SP72-201ENST00000364442 117 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXD9P28356 MIR34B-201ENST00000385076 84 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXD9P28356 NCOR1P3-201ENST00000420479 303 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 AL645937.1-202ENST00000421799 937 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 AC097713.2-201ENST00000430199 356 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 IFNA20P-201ENST00000436840 528 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 MRPL50P4-201ENST00000446432 475 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 MTND3P16-201ENST00000452205 344 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 RNU7-182P-201ENST00000459009 62 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 HMGB1P25-201ENST00000468402 607 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 AC092451.1-201ENST00000480211 153 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 AC091885.1-201ENST00000506658 268 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 AC112206.3-201ENST00000514578 389 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 SNORA31.20-201ENST00000517111 133 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 RNU6-1073P-201ENST00000517182 106 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 NARSP2-201ENST00000518524 679 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXD9P28356 AC107953.1-201ENST00000522216 297 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 AP005435.4-201ENST00000529514 284 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 AC109635.4-202ENST00000531666 412 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 AC093027.1-201ENST00000546698 429 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 AC128657.1-201ENST00000549459 145 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 MIR4775-201ENST00000581168 75 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 AP001029.3-201ENST00000588063 596 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.62□□□□□ -1.83
HOXD9P28356 XIAPP1-201ENST00000603162 600 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 AC007179.3-201ENST00000604976 235 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 RNU6-89P-201ENST00000606519 100 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 uc_338.5-201ENST00000611839 155 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 AP001486.3-201ENST00000615334 372 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 AC126177.8-201ENST00000618339 1015 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 AC005858.4-201ENST00000623191 700 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 TPTEP1-208ENST00000636884 213 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD9P28356 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.62□□□□□ -1.83
HOXD9P28356 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD9P28356 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD9P28356 ASNSP3-201ENST00000451989 1306 ntBASIC3.62□□□□□ -1.83
HOXD9P28356 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD9P28356 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD9P28356 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD9P28356 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD9P28356 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD9P28356 USP8P1-201ENST00000494673 3183 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXD9P28356 AC004925.1-201ENST00000624256 2706 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXD9P28356 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXD9P28356 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
HOXD9P28356 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD9P28356 RNU1-33P-201ENST00000364249 162 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 Y_RNA.231-201ENST00000364358 102 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 RNU6-1078P-201ENST00000364522 103 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 RNU6-1227P-201ENST00000383981 107 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 RNVU1-14-201ENST00000384770 164 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
HOXD9P28356 SNORD17-201ENST00000390930 237 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 RNU6-754P-201ENST00000391166 107 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 AL391417.1-201ENST00000404100 426 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 MIR1302-11-201ENST00000408051 138 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 MIR1302-9-201ENST00000408365 138 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 MIR1302-10-201ENST00000408734 138 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 RNU6-712P-201ENST00000410558 100 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXD9P28356 AC092447.6-201ENST00000414578 210 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 AL353678.1-201ENST00000422735 741 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 DUTP6-201ENST00000425573 462 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 RPL21P66-201ENST00000426566 466 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXD9P28356 SAR1AP4-201ENST00000429225 591 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXD9P28356 ERLEC1P1-201ENST00000433806 578 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXD9P28356 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXD9P28356 ANP32BP2-201ENST00000454525 545 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 snoU13.24-201ENST00000458998 104 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 AC010285.1-201ENST00000470580 392 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXD9P28356 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 HMGB1P22-201ENST00000505315 124 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD9P28356 AC026784.1-201ENST00000507986 352 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 AC074250.1-201ENST00000511117 192 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 RNU6-277P-201ENST00000516272 106 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 RNU7-51P-201ENST00000516560 62 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 RNU6-1314P-201ENST00000517139 104 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXD9P28356 AC126177.3-201ENST00000551839 688 ntBASIC3.61□□□□□ -1.83
HOXD9P28356 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms