Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC36.25■■■■□ 3.39
SHROOM4Q9ULL8 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC36.25■■■■□ 3.39
SHROOM4Q9ULL8 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC36.25■■■■□ 3.39
SHROOM4Q9ULL8 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC36.25■■■■□ 3.39
SHROOM4Q9ULL8 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC36.25■■■■□ 3.39
SHROOM4Q9ULL8 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC36.25■■■■□ 3.39
SHROOM4Q9ULL8 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC36.25■■■■□ 3.39
SHROOM4Q9ULL8 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC36.25■■■■□ 3.39
SHROOM4Q9ULL8 ILF2-202ENST00000368681 726 ntTSL 2 BASIC36.24■■■■□ 3.39
SHROOM4Q9ULL8 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC36.24■■■■□ 3.39
SHROOM4Q9ULL8 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC36.24■■■■□ 3.39
SHROOM4Q9ULL8 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC36.24■■■■□ 3.39
SHROOM4Q9ULL8 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC36.24■■■■□ 3.39
SHROOM4Q9ULL8 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC36.24■■■■□ 3.39
SHROOM4Q9ULL8 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC36.24■■■■□ 3.39
SHROOM4Q9ULL8 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC36.24■■■■□ 3.39
SHROOM4Q9ULL8 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC36.24■■■■□ 3.39
SHROOM4Q9ULL8 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC36.24■■■■□ 3.39
SHROOM4Q9ULL8 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC36.24■■■■□ 3.39
SHROOM4Q9ULL8 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC36.24■■■■□ 3.39
SHROOM4Q9ULL8 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC36.23■■■■□ 3.39
SHROOM4Q9ULL8 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC36.23■■■■□ 3.39
SHROOM4Q9ULL8 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC36.23■■■■□ 3.39
SHROOM4Q9ULL8 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC36.23■■■■□ 3.39
SHROOM4Q9ULL8 AL160237.2-201ENST00000556165 472 ntBASIC36.23■■■■□ 3.39
SHROOM4Q9ULL8 AL121672.3-201ENST00000608644 468 ntBASIC36.23■■■■□ 3.39
SHROOM4Q9ULL8 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC36.23■■■■□ 3.39
SHROOM4Q9ULL8 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC36.22■■■■□ 3.39
SHROOM4Q9ULL8 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC36.22■■■■□ 3.39
SHROOM4Q9ULL8 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC36.22■■■■□ 3.39
SHROOM4Q9ULL8 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC36.22■■■■□ 3.39
SHROOM4Q9ULL8 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC36.22■■■■□ 3.39
SHROOM4Q9ULL8 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC36.22■■■■□ 3.39
SHROOM4Q9ULL8 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC36.22■■■■□ 3.39
SHROOM4Q9ULL8 TSPY19P-201ENST00000418461 509 ntBASIC36.22■■■■□ 3.39
SHROOM4Q9ULL8 TSPY18P-201ENST00000441642 509 ntBASIC36.22■■■■□ 3.39
SHROOM4Q9ULL8 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC36.22■■■■□ 3.39
SHROOM4Q9ULL8 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC36.21■■■■□ 3.39
SHROOM4Q9ULL8 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC36.21■■■■□ 3.39
SHROOM4Q9ULL8 AC079781.3-201ENST00000449110 356 ntBASIC36.21■■■■□ 3.39
SHROOM4Q9ULL8 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC36.21■■■■□ 3.39
SHROOM4Q9ULL8 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC36.21■■■■□ 3.39
SHROOM4Q9ULL8 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC36.21■■■■□ 3.39
SHROOM4Q9ULL8 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC36.21■■■■□ 3.39
SHROOM4Q9ULL8 MED17-221ENST00000639724 2317 ntTSL 5 BASIC36.21■■■■□ 3.39
SHROOM4Q9ULL8 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC36.21■■■■□ 3.39
SHROOM4Q9ULL8 AC104417.2-201ENST00000562989 1793 ntBASIC36.21■■■■□ 3.39
SHROOM4Q9ULL8 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC36.21■■■■□ 3.39
SHROOM4Q9ULL8 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC36.2■■■■□ 3.39
SHROOM4Q9ULL8 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC36.2■■■■□ 3.39
SHROOM4Q9ULL8 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC36.2■■■■□ 3.39
SHROOM4Q9ULL8 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC36.2■■■■□ 3.39
SHROOM4Q9ULL8 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC36.2■■■■□ 3.39
SHROOM4Q9ULL8 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC36.2■■■■□ 3.39
SHROOM4Q9ULL8 ANKRD18DP-204ENST00000455355 1975 ntBASIC36.2■■■■□ 3.39
SHROOM4Q9ULL8 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC36.2■■■■□ 3.39
SHROOM4Q9ULL8 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC36.2■■■■□ 3.39
SHROOM4Q9ULL8 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC36.2■■■■□ 3.39
SHROOM4Q9ULL8 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC36.2■■■■□ 3.38
SHROOM4Q9ULL8 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC36.2■■■■□ 3.38
SHROOM4Q9ULL8 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC36.19■■■■□ 3.38
SHROOM4Q9ULL8 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC36.19■■■■□ 3.38
SHROOM4Q9ULL8 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC36.19■■■■□ 3.38
SHROOM4Q9ULL8 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC36.19■■■■□ 3.38
SHROOM4Q9ULL8 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC36.19■■■■□ 3.38
SHROOM4Q9ULL8 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC36.19■■■■□ 3.38
SHROOM4Q9ULL8 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC36.19■■■■□ 3.38
SHROOM4Q9ULL8 AC093525.10-201ENST00000625130 1569 ntBASIC36.19■■■■□ 3.38
SHROOM4Q9ULL8 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC36.19■■■■□ 3.38
SHROOM4Q9ULL8 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC36.19■■■■□ 3.38
SHROOM4Q9ULL8 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC36.19■■■■□ 3.38
SHROOM4Q9ULL8 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC36.19■■■■□ 3.38
SHROOM4Q9ULL8 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC36.19■■■■□ 3.38
SHROOM4Q9ULL8 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC36.18■■■■□ 3.38
SHROOM4Q9ULL8 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC36.18■■■■□ 3.38
SHROOM4Q9ULL8 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC36.18■■■■□ 3.38
SHROOM4Q9ULL8 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC36.18■■■■□ 3.38
SHROOM4Q9ULL8 SDHAP1-207ENST00000440850 2000 ntBASIC36.18■■■■□ 3.38
SHROOM4Q9ULL8 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC36.18■■■■□ 3.38
SHROOM4Q9ULL8 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC36.18■■■■□ 3.38
SHROOM4Q9ULL8 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC36.18■■■■□ 3.38
SHROOM4Q9ULL8 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC36.18■■■■□ 3.38
SHROOM4Q9ULL8 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC36.18■■■■□ 3.38
SHROOM4Q9ULL8 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC36.18■■■■□ 3.38
SHROOM4Q9ULL8 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC36.18■■■■□ 3.38
SHROOM4Q9ULL8 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC36.18■■■■□ 3.38
SHROOM4Q9ULL8 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC36.18■■■■□ 3.38
SHROOM4Q9ULL8 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC36.18■■■■□ 3.38
SHROOM4Q9ULL8 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC36.18■■■■□ 3.38
SHROOM4Q9ULL8 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC36.18■■■■□ 3.38
SHROOM4Q9ULL8 AC016734.2-201ENST00000624325 1377 ntBASIC36.17■■■■□ 3.38
SHROOM4Q9ULL8 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC36.17■■■■□ 3.38
SHROOM4Q9ULL8 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC36.17■■■■□ 3.38
SHROOM4Q9ULL8 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC36.17■■■■□ 3.38
SHROOM4Q9ULL8 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC36.17■■■■□ 3.38
SHROOM4Q9ULL8 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC36.17■■■■□ 3.38
SHROOM4Q9ULL8 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC36.17■■■■□ 3.38
SHROOM4Q9ULL8 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC36.17■■■■□ 3.38
SHROOM4Q9ULL8 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC36.17■■■■□ 3.38
SHROOM4Q9ULL8 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC36.17■■■■□ 3.38
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms