Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
NPAS1Q99742 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.38■□□□□ 0.37
NPAS1Q99742 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NPAS1Q99742 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NPAS1Q99742 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
NPAS1Q99742 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.38■□□□□ 0.37
NPAS1Q99742 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.38■□□□□ 0.37
NPAS1Q99742 AC004951.3-201ENST00000418645 1148 ntBASIC17.38■□□□□ 0.37
NPAS1Q99742 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NPAS1Q99742 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.38■□□□□ 0.37
NPAS1Q99742 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.38■□□□□ 0.37
NPAS1Q99742 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.38■□□□□ 0.37
NPAS1Q99742 AC026271.3-201ENST00000571884 352 ntBASIC17.38■□□□□ 0.37
NPAS1Q99742 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.38■□□□□ 0.37
NPAS1Q99742 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.38■□□□□ 0.37
NPAS1Q99742 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
NPAS1Q99742 AC130371.2-201ENST00000619443 611 ntBASIC17.38■□□□□ 0.37
NPAS1Q99742 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NPAS1Q99742 AL049812.1-201ENST00000432563 2267 ntBASIC17.38■□□□□ 0.37
NPAS1Q99742 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NPAS1Q99742 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NPAS1Q99742 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NPAS1Q99742 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NPAS1Q99742 AC079598.2-202ENST00000546624 1451 ntBASIC17.37■□□□□ 0.37
NPAS1Q99742 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
NPAS1Q99742 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NPAS1Q99742 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NPAS1Q99742 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NPAS1Q99742 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.37■□□□□ 0.37
NPAS1Q99742 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
NPAS1Q99742 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
NPAS1Q99742 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NPAS1Q99742 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
NPAS1Q99742 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.37■□□□□ 0.37
NPAS1Q99742 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NPAS1Q99742 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NPAS1Q99742 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NPAS1Q99742 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NPAS1Q99742 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NPAS1Q99742 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NPAS1Q99742 TSPY23P-201ENST00000440136 739 ntBASIC17.37■□□□□ 0.37
NPAS1Q99742 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.37■□□□□ 0.37
NPAS1Q99742 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.37■□□□□ 0.37
NPAS1Q99742 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.37■□□□□ 0.37
NPAS1Q99742 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.37■□□□□ 0.37
NPAS1Q99742 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.37■□□□□ 0.37
NPAS1Q99742 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.37■□□□□ 0.37
NPAS1Q99742 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.37■□□□□ 0.37
NPAS1Q99742 MIR4785-201ENST00000585005 73 ntBASIC17.37■□□□□ 0.37
NPAS1Q99742 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.37■□□□□ 0.37
NPAS1Q99742 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NPAS1Q99742 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NPAS1Q99742 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
NPAS1Q99742 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NPAS1Q99742 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
NPAS1Q99742 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NPAS1Q99742 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
NPAS1Q99742 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.37■□□□□ 0.37
NPAS1Q99742 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
NPAS1Q99742 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NPAS1Q99742 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
NPAS1Q99742 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.37■□□□□ 0.37
NPAS1Q99742 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.36■□□□□ 0.37
NPAS1Q99742 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
NPAS1Q99742 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.36■□□□□ 0.37
NPAS1Q99742 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.36■□□□□ 0.37
NPAS1Q99742 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NPAS1Q99742 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NPAS1Q99742 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.36■□□□□ 0.37
NPAS1Q99742 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.36■□□□□ 0.37
NPAS1Q99742 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.36■□□□□ 0.37
NPAS1Q99742 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NPAS1Q99742 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.36■□□□□ 0.37
NPAS1Q99742 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NPAS1Q99742 RBM17P1-201ENST00000453646 1190 ntBASIC17.36■□□□□ 0.37
NPAS1Q99742 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.36■□□□□ 0.37
NPAS1Q99742 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.36■□□□□ 0.37
NPAS1Q99742 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NPAS1Q99742 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.36■□□□□ 0.37
NPAS1Q99742 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NPAS1Q99742 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.36■□□□□ 0.37
NPAS1Q99742 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NPAS1Q99742 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
NPAS1Q99742 KRT8P11-201ENST00000409686 1436 ntBASIC17.36■□□□□ 0.37
NPAS1Q99742 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NPAS1Q99742 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
NPAS1Q99742 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NPAS1Q99742 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NPAS1Q99742 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
NPAS1Q99742 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.35■□□□□ 0.37
NPAS1Q99742 AC141586.3-201ENST00000562166 1838 ntBASIC17.35■□□□□ 0.37
NPAS1Q99742 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NPAS1Q99742 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.35■□□□□ 0.37
NPAS1Q99742 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NPAS1Q99742 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NPAS1Q99742 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
NPAS1Q99742 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NPAS1Q99742 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.35■□□□□ 0.37
NPAS1Q99742 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NPAS1Q99742 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms