Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 AP000692.2-201ENST00000608391 879 ntBASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLIP3Q96DZ5 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 AC005521.1-201ENST00000393351 872 ntBASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 AC113347.1-201ENST00000413321 391 ntBASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 AL137013.1-201ENST00000432946 1228 ntBASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 AC128688.1-201ENST00000487626 519 ntBASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 AC092865.7-201ENST00000641832 219 ntBASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLIP3Q96DZ5 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 LTB4R2-202ENST00000528054 3092 ntBASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 LINC01465-201ENST00000408887 1940 ntBASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CLIP3Q96DZ5 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
CLIP3Q96DZ5 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms