Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CPNE4Q96A23 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CPNE4Q96A23 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.12■□□□□ 0.33
CPNE4Q96A23 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CPNE4Q96A23 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CPNE4Q96A23 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CPNE4Q96A23 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.12■□□□□ 0.33
CPNE4Q96A23 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.12■□□□□ 0.33
CPNE4Q96A23 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CPNE4Q96A23 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CPNE4Q96A23 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CPNE4Q96A23 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CPNE4Q96A23 KRT8P11-201ENST00000409686 1436 ntBASIC17.12■□□□□ 0.33
CPNE4Q96A23 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CPNE4Q96A23 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.12■□□□□ 0.33
CPNE4Q96A23 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CPNE4Q96A23 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.11■□□□□ 0.33
CPNE4Q96A23 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CPNE4Q96A23 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CPNE4Q96A23 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.11■□□□□ 0.33
CPNE4Q96A23 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.11■□□□□ 0.33
CPNE4Q96A23 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.11■□□□□ 0.33
CPNE4Q96A23 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CPNE4Q96A23 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CPNE4Q96A23 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CPNE4Q96A23 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CPNE4Q96A23 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CPNE4Q96A23 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
CPNE4Q96A23 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.11■□□□□ 0.33
CPNE4Q96A23 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.11■□□□□ 0.33
CPNE4Q96A23 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.11■□□□□ 0.33
CPNE4Q96A23 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.11■□□□□ 0.33
CPNE4Q96A23 CKBP1-201ENST00000565489 1086 ntBASIC17.11■□□□□ 0.33
CPNE4Q96A23 C2orf69P3-201ENST00000565542 1120 ntBASIC17.11■□□□□ 0.33
CPNE4Q96A23 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
CPNE4Q96A23 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CPNE4Q96A23 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CPNE4Q96A23 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
CPNE4Q96A23 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
CPNE4Q96A23 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.11■□□□□ 0.33
CPNE4Q96A23 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.11■□□□□ 0.33
CPNE4Q96A23 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.11■□□□□ 0.33
CPNE4Q96A23 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
CPNE4Q96A23 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CPNE4Q96A23 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CPNE4Q96A23 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CPNE4Q96A23 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.11■□□□□ 0.33
CPNE4Q96A23 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.1■□□□□ 0.33
CPNE4Q96A23 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
CPNE4Q96A23 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPNE4Q96A23 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
CPNE4Q96A23 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.1■□□□□ 0.33
CPNE4Q96A23 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.1■□□□□ 0.33
CPNE4Q96A23 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CPNE4Q96A23 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPNE4Q96A23 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CPNE4Q96A23 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.1■□□□□ 0.33
CPNE4Q96A23 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPNE4Q96A23 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPNE4Q96A23 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPNE4Q96A23 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CPNE4Q96A23 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPNE4Q96A23 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPNE4Q96A23 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.1■□□□□ 0.33
CPNE4Q96A23 AL390955.1-201ENST00000428694 934 ntBASIC17.1■□□□□ 0.33
CPNE4Q96A23 TSPY23P-201ENST00000440136 739 ntBASIC17.1■□□□□ 0.33
CPNE4Q96A23 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CPNE4Q96A23 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.1■□□□□ 0.33
CPNE4Q96A23 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.1■□□□□ 0.33
CPNE4Q96A23 NAPSB-206ENST00000562112 1266 ntBASIC17.1■□□□□ 0.33
CPNE4Q96A23 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.1■□□□□ 0.33
CPNE4Q96A23 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.1■□□□□ 0.33
CPNE4Q96A23 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CPNE4Q96A23 AC093484.2-201ENST00000580996 2166 ntBASIC17.1■□□□□ 0.33
CPNE4Q96A23 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPNE4Q96A23 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPNE4Q96A23 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.1■□□□□ 0.33
CPNE4Q96A23 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.1■□□□□ 0.33
CPNE4Q96A23 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPNE4Q96A23 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CPNE4Q96A23 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CPNE4Q96A23 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CPNE4Q96A23 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
CPNE4Q96A23 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CPNE4Q96A23 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CPNE4Q96A23 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CPNE4Q96A23 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
CPNE4Q96A23 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CPNE4Q96A23 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.09■□□□□ 0.33
CPNE4Q96A23 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.09■□□□□ 0.33
CPNE4Q96A23 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CPNE4Q96A23 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CPNE4Q96A23 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CPNE4Q96A23 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
CPNE4Q96A23 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.09■□□□□ 0.33
CPNE4Q96A23 AC087499.1-201ENST00000418141 1075 ntBASIC17.09■□□□□ 0.33
CPNE4Q96A23 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.09■□□□□ 0.33
CPNE4Q96A23 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.09■□□□□ 0.33
CPNE4Q96A23 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.09■□□□□ 0.33
CPNE4Q96A23 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms