Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP3Q7Z494 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP3Q7Z494 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP3Q7Z494 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP3Q7Z494 DFFB-203ENST00000341385 572 ntTSL 5 BASIC25.9■■□□□ 1.74
NPHP3Q7Z494 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC25.9■■□□□ 1.74
NPHP3Q7Z494 PMS2P1-201ENST00000431037 1228 ntBASIC25.9■■□□□ 1.74
NPHP3Q7Z494 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC25.9■■□□□ 1.74
NPHP3Q7Z494 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC25.9■■□□□ 1.74
NPHP3Q7Z494 TK1-205ENST00000590862 642 ntTSL 3 BASIC25.9■■□□□ 1.74
NPHP3Q7Z494 LITAF-220ENST00000620789 692 ntTSL 5 BASIC25.9■■□□□ 1.74
NPHP3Q7Z494 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC25.9■■□□□ 1.74
NPHP3Q7Z494 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC25.9■■□□□ 1.74
NPHP3Q7Z494 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC25.9■■□□□ 1.74
NPHP3Q7Z494 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP3Q7Z494 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP3Q7Z494 Z83836.1-201ENST00000624605 1642 ntBASIC25.9■■□□□ 1.74
NPHP3Q7Z494 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC25.9■■□□□ 1.74
NPHP3Q7Z494 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC25.9■■□□□ 1.74
NPHP3Q7Z494 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP3Q7Z494 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP3Q7Z494 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC25.89■■□□□ 1.74
NPHP3Q7Z494 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP3Q7Z494 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC25.89■■□□□ 1.74
NPHP3Q7Z494 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC25.89■■□□□ 1.74
NPHP3Q7Z494 AC074051.2-201ENST00000565115 352 ntBASIC25.89■■□□□ 1.74
NPHP3Q7Z494 AC090616.6-201ENST00000582640 721 ntBASIC25.89■■□□□ 1.74
NPHP3Q7Z494 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP3Q7Z494 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP3Q7Z494 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP3Q7Z494 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP3Q7Z494 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
NPHP3Q7Z494 UBC-206ENST00000538617 1303 ntTSL 5 BASIC25.89■■□□□ 1.74
NPHP3Q7Z494 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.73
NPHP3Q7Z494 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC25.89■■□□□ 1.73
NPHP3Q7Z494 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
NPHP3Q7Z494 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
NPHP3Q7Z494 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
NPHP3Q7Z494 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP3Q7Z494 AL590627.1-203ENST00000421194 1026 ntBASIC25.88■■□□□ 1.73
NPHP3Q7Z494 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC25.88■■□□□ 1.73
NPHP3Q7Z494 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC25.88■■□□□ 1.73
NPHP3Q7Z494 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC25.88■■□□□ 1.73
NPHP3Q7Z494 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC25.88■■□□□ 1.73
NPHP3Q7Z494 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC25.88■■□□□ 1.73
NPHP3Q7Z494 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP3Q7Z494 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP3Q7Z494 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
NPHP3Q7Z494 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP3Q7Z494 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP3Q7Z494 AP005212.1-201ENST00000581547 1997 ntBASIC25.88■■□□□ 1.73
NPHP3Q7Z494 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP3Q7Z494 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC25.88■■□□□ 1.73
NPHP3Q7Z494 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC25.88■■□□□ 1.73
NPHP3Q7Z494 AC026310.3-201ENST00000625186 2373 ntBASIC25.88■■□□□ 1.73
NPHP3Q7Z494 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP3Q7Z494 AKR1C7P-201ENST00000305623 895 ntBASIC25.88■■□□□ 1.73
NPHP3Q7Z494 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP3Q7Z494 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP3Q7Z494 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
NPHP3Q7Z494 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
NPHP3Q7Z494 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
NPHP3Q7Z494 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
NPHP3Q7Z494 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
NPHP3Q7Z494 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC25.87■■□□□ 1.73
NPHP3Q7Z494 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
NPHP3Q7Z494 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC25.87■■□□□ 1.73
NPHP3Q7Z494 AC233702.3-201ENST00000578656 1387 ntBASIC25.87■■□□□ 1.73
NPHP3Q7Z494 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC25.87■■□□□ 1.73
NPHP3Q7Z494 KRT18P13-201ENST00000400056 1290 ntBASIC25.87■■□□□ 1.73
NPHP3Q7Z494 RPP21-221ENST00000428040 594 ntTSL 2 BASIC25.87■■□□□ 1.73
NPHP3Q7Z494 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
NPHP3Q7Z494 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC25.87■■□□□ 1.73
NPHP3Q7Z494 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC25.87■■□□□ 1.73
NPHP3Q7Z494 NME4-212ENST00000621774 904 ntTSL 3 BASIC25.87■■□□□ 1.73
NPHP3Q7Z494 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC25.86■■□□□ 1.73
NPHP3Q7Z494 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC25.86■■□□□ 1.73
NPHP3Q7Z494 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP3Q7Z494 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP3Q7Z494 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP3Q7Z494 CLDN5-201ENST00000403084 2357 ntBASIC25.86■■□□□ 1.73
NPHP3Q7Z494 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP3Q7Z494 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP3Q7Z494 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC25.86■■□□□ 1.73
NPHP3Q7Z494 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP3Q7Z494 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC25.86■■□□□ 1.73
NPHP3Q7Z494 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP3Q7Z494 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC25.86■■□□□ 1.73
NPHP3Q7Z494 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC25.86■■□□□ 1.73
NPHP3Q7Z494 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC25.86■■□□□ 1.73
NPHP3Q7Z494 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC25.86■■□□□ 1.73
NPHP3Q7Z494 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC25.86■■□□□ 1.73
NPHP3Q7Z494 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP3Q7Z494 LINC00167-201ENST00000530583 1419 ntBASIC25.86■■□□□ 1.73
NPHP3Q7Z494 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
NPHP3Q7Z494 AL691432.2-201ENST00000607222 2038 ntBASIC25.85■■□□□ 1.73
NPHP3Q7Z494 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
NPHP3Q7Z494 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
NPHP3Q7Z494 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC25.85■■□□□ 1.73
NPHP3Q7Z494 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC25.85■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms